Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20157

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20156 and SM_b20157 are separated by 41 nucleotidesSM_b20157 and SM_b20158 are separated by 28 nucleotides SM_b20156: SM_b20156 - ABC transporter ATP-binding protein, at 174,099 to 175,232 _b20156 SM_b20157: SM_b20157 - ABC transporter substrate-binding protein, at 175,274 to 176,398 _b20157 SM_b20158: SM_b20158 - ABC transporter substrate-binding protein, at 176,427 to 177,551 _b20158 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 174.372 kb on + strand, within SM_b20156at 174.372 kb on + strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.658 kb on + strand, within SM_b20156at 174.659 kb on - strand, within SM_b20156at 174.662 kb on + strand, within SM_b20156at 174.662 kb on + strand, within SM_b20156at 174.663 kb on - strand, within SM_b20156at 174.663 kb on - strand, within SM_b20156at 174.666 kb on + strand, within SM_b20156at 174.786 kb on + strand, within SM_b20156at 174.786 kb on + strand, within SM_b20156at 174.787 kb on - strand, within SM_b20156at 174.787 kb on - strand, within SM_b20156at 174.787 kb on - strand, within SM_b20156at 174.844 kb on + strandat 174.844 kb on + strand, within SM_b20156at 174.844 kb on + strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.898 kb on - strand, within SM_b20156at 174.966 kb on + strand, within SM_b20156at 175.169 kb on - strandat 175.219 kb on + strandat 175.224 kb on + strandat 175.225 kb on - strandat 175.273 kb on + strandat 175.274 kb on - strandat 175.328 kb on + strandat 175.329 kb on - strandat 175.418 kb on + strand, within SM_b20157at 175.419 kb on - strand, within SM_b20157at 175.470 kb on - strand, within SM_b20157at 175.712 kb on + strand, within SM_b20157at 175.713 kb on - strand, within SM_b20157at 175.717 kb on + strand, within SM_b20157at 175.750 kb on + strand, within SM_b20157at 175.751 kb on - strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.821 kb on - strand, within SM_b20157at 175.821 kb on - strand, within SM_b20157at 175.877 kb on + strand, within SM_b20157at 175.889 kb on + strandat 176.318 kb on + strandat 176.432 kb on + strandat 176.571 kb on + strand, within SM_b20158at 176.571 kb on + strand, within SM_b20158at 176.572 kb on - strand, within SM_b20158at 176.572 kb on - strand, within SM_b20158at 176.572 kb on - strand, within SM_b20158at 176.623 kb on - strand, within SM_b20158at 176.781 kb on + strand, within SM_b20158at 176.781 kb on + strand, within SM_b20158at 176.781 kb on + strand, within SM_b20158at 176.782 kb on - strand, within SM_b20158at 176.782 kb on - strand, within SM_b20158at 176.782 kb on - strand, within SM_b20158at 176.865 kb on + strand, within SM_b20158at 176.880 kb on + strand, within SM_b20158at 176.905 kb on + strand, within SM_b20158at 176.905 kb on + strand, within SM_b20158at 176.905 kb on + strand, within SM_b20158at 176.973 kb on + strand, within SM_b20158at 176.974 kb on - strand, within SM_b20158at 176.974 kb on - strand, within SM_b20158at 176.975 kb on + strand, within SM_b20158at 177.231 kb on + strand, within SM_b20158at 177.279 kb on + strand, within SM_b20158at 177.279 kb on + strand, within SM_b20158at 177.280 kb on - strand, within SM_b20158at 177.280 kb on - strand, within SM_b20158at 177.280 kb on - strand, within SM_b20158at 177.280 kb on - strand, within SM_b20158at 177.345 kb on + strand, within SM_b20158at 177.345 kb on + strand, within SM_b20158at 177.345 kb on + strand, within SM_b20158at 177.346 kb on - strand, within SM_b20158at 177.346 kb on - strand, within SM_b20158at 177.348 kb on - strand, within SM_b20158

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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174,372 + SM_b20156 0.24 -0.4
174,372 + SM_b20156 0.24 +0.8
174,373 - SM_b20156 0.24 -0.5
174,373 - SM_b20156 0.24 +0.6
174,373 - SM_b20156 0.24 +0.2
174,373 - SM_b20156 0.24 +1.9
174,373 - SM_b20156 0.24 -1.0
174,658 + SM_b20156 0.49 -1.3
174,659 - SM_b20156 0.49 +0.4
174,662 + SM_b20156 0.50 +0.2
174,662 + SM_b20156 0.50 +0.7
174,663 - SM_b20156 0.50 -0.0
174,663 - SM_b20156 0.50 +0.5
174,666 + SM_b20156 0.50 -0.2
174,786 + SM_b20156 0.61 +1.5
174,786 + SM_b20156 0.61 +0.0
174,787 - SM_b20156 0.61 -0.2
174,787 - SM_b20156 0.61 -0.6
174,787 - SM_b20156 0.61 +0.2
174,844 + -0.2
174,844 + SM_b20156 0.66 +0.8
174,844 + SM_b20156 0.66 -0.5
174,845 - SM_b20156 0.66 -0.7
174,845 - SM_b20156 0.66 -0.1
174,845 - SM_b20156 0.66 +0.1
174,845 - SM_b20156 0.66 +0.2
174,898 - SM_b20156 0.70 +0.2
174,966 + SM_b20156 0.76 -0.2
175,169 - -0.6
175,219 + -0.1
175,224 + -0.0
175,225 - -0.9
175,273 + +0.3
175,274 - -1.2
175,328 + -0.7
175,329 - -0.2
175,418 + SM_b20157 0.13 +1.4
175,419 - SM_b20157 0.13 +0.8
175,470 - SM_b20157 0.17 +1.2
175,712 + SM_b20157 0.39 +0.3
175,713 - SM_b20157 0.39 -0.1
175,717 + SM_b20157 0.39 +0.9
175,750 + SM_b20157 0.42 +1.9
175,751 - SM_b20157 0.42 -0.7
175,820 + SM_b20157 0.49 +0.4
175,820 + SM_b20157 0.49 -0.4
175,820 + SM_b20157 0.49 -0.1
175,820 + SM_b20157 0.49 +0.1
175,821 - SM_b20157 0.49 +0.4
175,821 - SM_b20157 0.49 +0.2
175,877 + SM_b20157 0.54 +1.1
175,889 + +1.4
176,318 + -1.9
176,432 + +0.2
176,571 + SM_b20158 0.13 +0.1
176,571 + SM_b20158 0.13 +0.1
176,572 - SM_b20158 0.13 -1.7
176,572 - SM_b20158 0.13 +0.1
176,572 - SM_b20158 0.13 -0.6
176,623 - SM_b20158 0.17 -0.1
176,781 + SM_b20158 0.31 +0.8
176,781 + SM_b20158 0.31 -0.0
176,781 + SM_b20158 0.31 -0.3
176,782 - SM_b20158 0.32 -1.1
176,782 - SM_b20158 0.32 +0.6
176,782 - SM_b20158 0.32 +0.1
176,865 + SM_b20158 0.39 +0.3
176,880 + SM_b20158 0.40 +0.6
176,905 + SM_b20158 0.42 +0.6
176,905 + SM_b20158 0.42 +2.4
176,905 + SM_b20158 0.42 +0.3
176,973 + SM_b20158 0.49 -0.8
176,974 - SM_b20158 0.49 +0.0
176,974 - SM_b20158 0.49 +0.4
176,975 + SM_b20158 0.49 -0.1
177,231 + SM_b20158 0.71 -0.1
177,279 + SM_b20158 0.76 -0.4
177,279 + SM_b20158 0.76 +0.1
177,280 - SM_b20158 0.76 -0.6
177,280 - SM_b20158 0.76 +0.0
177,280 - SM_b20158 0.76 -1.4
177,280 - SM_b20158 0.76 -0.1
177,345 + SM_b20158 0.82 +0.7
177,345 + SM_b20158 0.82 -0.5
177,345 + SM_b20158 0.82 -0.6
177,346 - SM_b20158 0.82 -0.2
177,346 - SM_b20158 0.82 -0.2
177,348 - SM_b20158 0.82 -0.8

Or see this region's nucleotide sequence