Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20103 and SM_b20104 are separated by 75 nucleotides SM_b20104 and SM_b20105 are separated by 101 nucleotides SM_b20105 and SM_b20106 are separated by 179 nucleotides
SM_b20103: SM_b20103 - FAD-dependent oxidoreductase, at 113,274 to 115,076
_b20103
SM_b20104: SM_b20104 - hypothetical protein, at 115,152 to 115,910
_b20104
SM_b20105: SM_b20105 - transcriptional regulator, at 116,012 to 116,644
_b20105
SM_b20106: SM_b20106 - transcriptional regulator, at 116,824 to 117,555
_b20106
Position (kb)
115
116 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 114.415 kb on - strand, within SM_b20103 at 114.549 kb on + strand, within SM_b20103 at 114.618 kb on + strand, within SM_b20103 at 114.619 kb on - strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.642 kb on + strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.643 kb on - strand, within SM_b20103 at 114.645 kb on - strand, within SM_b20103 at 114.777 kb on + strand, within SM_b20103 at 114.985 kb on - strand at 114.994 kb on - strand at 115.031 kb on - strand at 115.031 kb on - strand at 115.045 kb on - strand at 115.254 kb on - strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.367 kb on + strand, within SM_b20104 at 115.368 kb on - strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.369 kb on + strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.370 kb on - strand, within SM_b20104 at 115.423 kb on - strand, within SM_b20104 at 115.440 kb on - strand, within SM_b20104 at 115.541 kb on + strand, within SM_b20104 at 115.541 kb on + strand at 115.541 kb on + strand, within SM_b20104 at 115.541 kb on + strand, within SM_b20104 at 115.542 kb on - strand, within SM_b20104 at 115.580 kb on - strand, within SM_b20104 at 115.588 kb on - strand, within SM_b20104 at 115.900 kb on + strand at 115.901 kb on - strand at 115.983 kb on + strand at 115.983 kb on + strand at 115.984 kb on - strand at 115.984 kb on - strand at 116.013 kb on + strand at 116.024 kb on + strand at 116.024 kb on + strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.025 kb on - strand at 116.456 kb on + strand, within SM_b20105 at 116.495 kb on + strand, within SM_b20105
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 114,415 - SM_b20103 0.63 -0.2 114,549 + SM_b20103 0.71 -0.4 114,618 + SM_b20103 0.75 +0.0 114,619 - SM_b20103 0.75 -0.6 114,642 + SM_b20103 0.76 -1.2 114,642 + SM_b20103 0.76 +0.8 114,642 + SM_b20103 0.76 -0.4 114,643 - SM_b20103 0.76 -0.5 114,643 - SM_b20103 0.76 -0.3 114,643 - SM_b20103 0.76 -0.1 114,645 - SM_b20103 0.76 +0.3 114,777 + SM_b20103 0.83 -0.1 114,985 - +0.0 114,994 - -1.2 115,031 - +0.2 115,031 - -1.1 115,045 - +0.8 115,254 - SM_b20104 0.13 -0.2 115,367 + SM_b20104 0.28 +0.0 115,367 + SM_b20104 0.28 -0.0 115,367 + SM_b20104 0.28 +0.2 115,368 - SM_b20104 0.28 +3.5 115,369 + SM_b20104 0.29 -0.6 115,369 + SM_b20104 0.29 +0.8 115,369 + SM_b20104 0.29 +0.1 115,369 + SM_b20104 0.29 +0.1 115,370 - SM_b20104 0.29 +1.4 115,370 - SM_b20104 0.29 -0.1 115,370 - SM_b20104 0.29 +0.3 115,423 - SM_b20104 0.36 +0.1 115,440 - SM_b20104 0.38 -0.1 115,541 + SM_b20104 0.51 +0.0 115,541 + +3.9 115,541 + SM_b20104 0.51 +0.0 115,541 + SM_b20104 0.51 -0.4 115,542 - SM_b20104 0.51 +0.7 115,580 - SM_b20104 0.56 -0.5 115,588 - SM_b20104 0.57 +0.7 115,900 + +0.1 115,901 - -0.1 115,983 + +0.4 115,983 + -1.2 115,984 - -0.0 115,984 - -0.1 116,013 + +0.0 116,024 + +0.0 116,024 + -0.5 116,025 - -0.7 116,025 - +0.9 116,025 - -0.4 116,025 - +0.2 116,456 + SM_b20105 0.70 -1.6 116,495 + SM_b20105 0.76 -1.0
Or see this region's nucleotide sequence