Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35205

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS35200 and RR42_RS35205 are separated by 334 nucleotidesRR42_RS35205 and RR42_RS35210 are separated by 314 nucleotides RR42_RS35200: RR42_RS35200 - epimerase, at 3,349,999 to 3,350,901 _RS35200 RR42_RS35205: RR42_RS35205 - translation initiation inhibitor, at 3,351,236 to 3,351,547 _RS35205 RR42_RS35210: RR42_RS35210 - TetR family transcriptional regulator, at 3,351,862 to 3,353,091 _RS35210 Position (kb) 3351 3352Strain fitness (log2 ratio) -2 -1 0 1 2at 3350.246 kb on + strand, within RR42_RS35200at 3350.246 kb on + strand, within RR42_RS35200at 3350.247 kb on - strand, within RR42_RS35200at 3350.285 kb on + strand, within RR42_RS35200at 3350.286 kb on - strand, within RR42_RS35200at 3350.613 kb on + strand, within RR42_RS35200at 3350.663 kb on - strand, within RR42_RS35200at 3350.826 kb on + strandat 3350.826 kb on + strandat 3350.827 kb on - strandat 3350.827 kb on - strandat 3350.827 kb on - strandat 3351.053 kb on + strandat 3351.053 kb on + strandat 3351.053 kb on + strandat 3351.053 kb on + strandat 3351.053 kb on + strandat 3351.054 kb on - strandat 3351.054 kb on - strandat 3351.054 kb on - strandat 3351.112 kb on + strandat 3351.113 kb on - strandat 3351.160 kb on - strandat 3351.220 kb on + strandat 3351.276 kb on + strand, within RR42_RS35205at 3351.276 kb on + strand, within RR42_RS35205at 3351.276 kb on + strand, within RR42_RS35205at 3351.283 kb on + strand, within RR42_RS35205at 3351.283 kb on + strand, within RR42_RS35205at 3351.284 kb on - strand, within RR42_RS35205at 3351.285 kb on + strand, within RR42_RS35205at 3351.285 kb on + strand, within RR42_RS35205at 3351.285 kb on + strand, within RR42_RS35205at 3351.444 kb on + strand, within RR42_RS35205at 3351.445 kb on - strand, within RR42_RS35205at 3351.445 kb on - strand, within RR42_RS35205at 3351.751 kb on - strandat 3351.819 kb on + strandat 3351.819 kb on + strandat 3351.820 kb on - strandat 3351.820 kb on - strandat 3351.820 kb on - strandat 3351.820 kb on - strandat 3351.820 kb on - strandat 3351.851 kb on + strandat 3351.852 kb on - strandat 3352.024 kb on + strand, within RR42_RS35210at 3352.025 kb on - strand, within RR42_RS35210at 3352.025 kb on - strand, within RR42_RS35210at 3352.025 kb on - strand, within RR42_RS35210at 3352.025 kb on - strand, within RR42_RS35210at 3352.267 kb on - strand, within RR42_RS35210at 3352.402 kb on + strand, within RR42_RS35210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,350,246 + RR42_RS35200 0.27 -1.4
3,350,246 + RR42_RS35200 0.27 -0.6
3,350,247 - RR42_RS35200 0.27 -0.3
3,350,285 + RR42_RS35200 0.32 -1.1
3,350,286 - RR42_RS35200 0.32 +1.1
3,350,613 + RR42_RS35200 0.68 -0.3
3,350,663 - RR42_RS35200 0.74 +0.7
3,350,826 + +0.4
3,350,826 + -2.5
3,350,827 - -2.4
3,350,827 - +0.2
3,350,827 - -0.6
3,351,053 + +0.4
3,351,053 + +0.2
3,351,053 + -0.6
3,351,053 + -0.5
3,351,053 + -0.3
3,351,054 - -1.4
3,351,054 - -1.0
3,351,054 - +0.0
3,351,112 + +1.8
3,351,113 - +0.4
3,351,160 - +0.4
3,351,220 + +0.9
3,351,276 + RR42_RS35205 0.13 -0.6
3,351,276 + RR42_RS35205 0.13 -0.6
3,351,276 + RR42_RS35205 0.13 +0.3
3,351,283 + RR42_RS35205 0.15 +0.7
3,351,283 + RR42_RS35205 0.15 +0.7
3,351,284 - RR42_RS35205 0.15 +0.5
3,351,285 + RR42_RS35205 0.16 +0.5
3,351,285 + RR42_RS35205 0.16 +1.2
3,351,285 + RR42_RS35205 0.16 -0.7
3,351,444 + RR42_RS35205 0.67 +1.3
3,351,445 - RR42_RS35205 0.67 +0.6
3,351,445 - RR42_RS35205 0.67 +0.7
3,351,751 - -0.5
3,351,819 + +0.5
3,351,819 + +0.1
3,351,820 - +1.3
3,351,820 - +0.5
3,351,820 - +0.8
3,351,820 - +0.3
3,351,820 - +0.9
3,351,851 + +0.1
3,351,852 - -0.4
3,352,024 + RR42_RS35210 0.13 -0.3
3,352,025 - RR42_RS35210 0.13 +0.3
3,352,025 - RR42_RS35210 0.13 -0.1
3,352,025 - RR42_RS35210 0.13 +0.1
3,352,025 - RR42_RS35210 0.13 -1.8
3,352,267 - RR42_RS35210 0.33 -0.5
3,352,402 + RR42_RS35210 0.44 -0.3

Or see this region's nucleotide sequence