Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21695 and RR42_RS21700 are separated by 529 nucleotides RR42_RS21700 and RR42_RS21705 are separated by 284 nucleotides
RR42_RS21695: RR42_RS21695 - DNA-binding protein, at 194,447 to 195,034
_RS21695
RR42_RS21700: RR42_RS21700 - membrane protein, at 195,564 to 197,135
_RS21700
RR42_RS21705: RR42_RS21705 - alcohol dehydrogenase, at 197,420 to 198,385
_RS21705
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 194.607 kb on + strand, within RR42_RS21695 at 194.754 kb on + strand, within RR42_RS21695 at 194.754 kb on + strand, within RR42_RS21695 at 194.755 kb on - strand, within RR42_RS21695 at 195.291 kb on + strand at 195.291 kb on + strand at 195.291 kb on + strand at 195.292 kb on - strand at 195.292 kb on - strand at 195.293 kb on + strand at 195.293 kb on + strand at 195.478 kb on - strand at 196.014 kb on - strand, within RR42_RS21700 at 196.631 kb on - strand, within RR42_RS21700 at 196.631 kb on - strand, within RR42_RS21700 at 196.631 kb on - strand, within RR42_RS21700 at 196.639 kb on + strand, within RR42_RS21700 at 196.639 kb on + strand, within RR42_RS21700 at 196.639 kb on + strand, within RR42_RS21700 at 196.639 kb on + strand, within RR42_RS21700 at 196.639 kb on + strand, within RR42_RS21700 at 196.639 kb on + strand, within RR42_RS21700 at 196.640 kb on - strand, within RR42_RS21700 at 196.640 kb on - strand, within RR42_RS21700 at 196.640 kb on - strand, within RR42_RS21700 at 196.640 kb on - strand, within RR42_RS21700 at 196.760 kb on - strand, within RR42_RS21700 at 196.867 kb on + strand, within RR42_RS21700 at 196.868 kb on - strand, within RR42_RS21700 at 196.868 kb on - strand, within RR42_RS21700 at 196.963 kb on + strand, within RR42_RS21700 at 196.963 kb on + strand, within RR42_RS21700 at 196.964 kb on - strand, within RR42_RS21700 at 197.300 kb on + strand at 197.301 kb on - strand at 197.301 kb on - strand at 197.311 kb on - strand at 197.356 kb on + strand at 197.356 kb on + strand at 197.356 kb on + strand at 197.357 kb on - strand at 197.589 kb on - strand, within RR42_RS21705 at 197.738 kb on + strand, within RR42_RS21705 at 197.738 kb on + strand, within RR42_RS21705 at 197.739 kb on - strand, within RR42_RS21705 at 197.741 kb on - strand, within RR42_RS21705 at 197.787 kb on - strand, within RR42_RS21705 at 197.798 kb on + strand, within RR42_RS21705 at 197.799 kb on - strand, within RR42_RS21705 at 197.907 kb on - strand, within RR42_RS21705 at 197.987 kb on + strand, within RR42_RS21705 at 197.987 kb on + strand, within RR42_RS21705 at 197.988 kb on - strand, within RR42_RS21705 at 197.996 kb on + strand, within RR42_RS21705 at 197.996 kb on + strand, within RR42_RS21705 at 197.996 kb on + strand, within RR42_RS21705 at 197.997 kb on - strand, within RR42_RS21705 at 198.065 kb on + strand, within RR42_RS21705 at 198.065 kb on + strand, within RR42_RS21705 at 198.065 kb on + strand, within RR42_RS21705 at 198.066 kb on - strand, within RR42_RS21705 at 198.066 kb on - strand, within RR42_RS21705 at 198.066 kb on - strand, within RR42_RS21705 at 198.066 kb on - strand, within RR42_RS21705 at 198.069 kb on - strand, within RR42_RS21705 at 198.101 kb on + strand, within RR42_RS21705 at 198.101 kb on + strand, within RR42_RS21705
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 194,607 + RR42_RS21695 0.27 +1.1 194,754 + RR42_RS21695 0.52 +1.3 194,754 + RR42_RS21695 0.52 -0.5 194,755 - RR42_RS21695 0.52 +0.9 195,291 + -2.0 195,291 + +0.3 195,291 + +0.7 195,292 - -0.5 195,292 - +2.0 195,293 + -0.1 195,293 + -0.2 195,478 - -0.4 196,014 - RR42_RS21700 0.29 -0.7 196,631 - RR42_RS21700 0.68 -1.1 196,631 - RR42_RS21700 0.68 -0.5 196,631 - RR42_RS21700 0.68 -0.1 196,639 + RR42_RS21700 0.68 +0.1 196,639 + RR42_RS21700 0.68 -0.5 196,639 + RR42_RS21700 0.68 -0.4 196,639 + RR42_RS21700 0.68 +0.8 196,639 + RR42_RS21700 0.68 -0.8 196,639 + RR42_RS21700 0.68 +0.6 196,640 - RR42_RS21700 0.68 -0.6 196,640 - RR42_RS21700 0.68 -1.1 196,640 - RR42_RS21700 0.68 -0.5 196,640 - RR42_RS21700 0.68 -0.1 196,760 - RR42_RS21700 0.76 -0.3 196,867 + RR42_RS21700 0.83 -0.6 196,868 - RR42_RS21700 0.83 -0.3 196,868 - RR42_RS21700 0.83 +0.1 196,963 + RR42_RS21700 0.89 -1.5 196,963 + RR42_RS21700 0.89 -0.3 196,964 - RR42_RS21700 0.89 +0.2 197,300 + +1.0 197,301 - -0.4 197,301 - -1.4 197,311 - +0.6 197,356 + -0.7 197,356 + +0.3 197,356 + -1.7 197,357 - +2.0 197,589 - RR42_RS21705 0.17 +0.8 197,738 + RR42_RS21705 0.33 +0.6 197,738 + RR42_RS21705 0.33 -0.1 197,739 - RR42_RS21705 0.33 -0.4 197,741 - RR42_RS21705 0.33 -0.5 197,787 - RR42_RS21705 0.38 -0.8 197,798 + RR42_RS21705 0.39 +1.3 197,799 - RR42_RS21705 0.39 +0.6 197,907 - RR42_RS21705 0.50 -0.1 197,987 + RR42_RS21705 0.59 +0.4 197,987 + RR42_RS21705 0.59 +0.2 197,988 - RR42_RS21705 0.59 -0.9 197,996 + RR42_RS21705 0.60 -0.1 197,996 + RR42_RS21705 0.60 +1.3 197,996 + RR42_RS21705 0.60 -1.1 197,997 - RR42_RS21705 0.60 -0.2 198,065 + RR42_RS21705 0.67 +1.0 198,065 + RR42_RS21705 0.67 -0.4 198,065 + RR42_RS21705 0.67 +0.1 198,066 - RR42_RS21705 0.67 +1.0 198,066 - RR42_RS21705 0.67 +0.4 198,066 - RR42_RS21705 0.67 +1.1 198,066 - RR42_RS21705 0.67 +0.7 198,069 - RR42_RS21705 0.67 -0.1 198,101 + RR42_RS21705 0.70 -0.3 198,101 + RR42_RS21705 0.70 -0.1
Or see this region's nucleotide sequence