Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05745

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05740 and RR42_RS05745 are separated by 266 nucleotidesRR42_RS05745 and RR42_RS05750 are separated by 117 nucleotidesRR42_RS05750 and RR42_RS05755 are separated by 105 nucleotides RR42_RS05740: RR42_RS05740 - ABC transporter substrate-binding protein, at 1,262,869 to 1,263,876 _RS05740 RR42_RS05745: RR42_RS05745 - aminoglycoside phosphotransferase, at 1,264,143 to 1,265,219 _RS05745 RR42_RS05750: RR42_RS05750 - fructose 2,6-bisphosphatase, at 1,265,337 to 1,266,071 _RS05750 RR42_RS05755: RR42_RS05755 - enoyl-CoA hydratase, at 1,266,177 to 1,266,956 _RS05755 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1263.291 kb on - strand, within RR42_RS05740at 1263.291 kb on - strand, within RR42_RS05740at 1263.291 kb on - strand, within RR42_RS05740at 1263.299 kb on + strand, within RR42_RS05740at 1263.299 kb on + strand, within RR42_RS05740at 1263.299 kb on + strand, within RR42_RS05740at 1263.299 kb on + strand, within RR42_RS05740at 1263.300 kb on - strand, within RR42_RS05740at 1263.300 kb on - strand, within RR42_RS05740at 1263.423 kb on + strand, within RR42_RS05740at 1263.424 kb on - strand, within RR42_RS05740at 1263.467 kb on + strand, within RR42_RS05740at 1263.730 kb on + strand, within RR42_RS05740at 1263.730 kb on + strand, within RR42_RS05740at 1263.731 kb on - strand, within RR42_RS05740at 1263.731 kb on - strand, within RR42_RS05740at 1263.731 kb on - strand, within RR42_RS05740at 1263.731 kb on - strand, within RR42_RS05740at 1263.731 kb on - strand, within RR42_RS05740at 1263.731 kb on - strand, within RR42_RS05740at 1263.754 kb on - strand, within RR42_RS05740at 1263.940 kb on + strandat 1263.941 kb on - strandat 1263.941 kb on - strandat 1264.145 kb on - strandat 1264.304 kb on - strand, within RR42_RS05745at 1264.348 kb on + strand, within RR42_RS05745at 1264.349 kb on - strand, within RR42_RS05745at 1264.352 kb on + strand, within RR42_RS05745at 1264.352 kb on + strand, within RR42_RS05745at 1264.353 kb on - strand, within RR42_RS05745at 1264.361 kb on - strand, within RR42_RS05745at 1264.361 kb on - strand, within RR42_RS05745at 1264.577 kb on + strand, within RR42_RS05745at 1264.577 kb on + strand, within RR42_RS05745at 1264.577 kb on + strand, within RR42_RS05745at 1264.578 kb on - strand, within RR42_RS05745at 1264.578 kb on - strand, within RR42_RS05745at 1264.601 kb on + strand, within RR42_RS05745at 1264.601 kb on + strand, within RR42_RS05745at 1264.602 kb on - strand, within RR42_RS05745at 1264.666 kb on + strand, within RR42_RS05745at 1264.666 kb on + strand, within RR42_RS05745at 1264.667 kb on - strand, within RR42_RS05745at 1264.667 kb on - strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.702 kb on + strand, within RR42_RS05745at 1264.703 kb on - strand, within RR42_RS05745at 1264.744 kb on + strand, within RR42_RS05745at 1264.745 kb on - strand, within RR42_RS05745at 1264.789 kb on + strand, within RR42_RS05745at 1264.790 kb on - strand, within RR42_RS05745at 1264.790 kb on - strand, within RR42_RS05745at 1264.790 kb on - strand, within RR42_RS05745at 1264.870 kb on + strand, within RR42_RS05745at 1264.912 kb on + strand, within RR42_RS05745at 1264.912 kb on + strand, within RR42_RS05745at 1264.913 kb on - strand, within RR42_RS05745at 1264.913 kb on - strand, within RR42_RS05745at 1264.913 kb on - strand, within RR42_RS05745at 1265.032 kb on + strand, within RR42_RS05745at 1265.032 kb on + strand, within RR42_RS05745at 1265.033 kb on - strand, within RR42_RS05745at 1265.033 kb on - strand, within RR42_RS05745at 1265.266 kb on + strandat 1265.267 kb on - strandat 1265.267 kb on - strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.319 kb on + strandat 1265.320 kb on - strandat 1265.320 kb on - strandat 1265.320 kb on - strandat 1265.320 kb on - strandat 1265.338 kb on + strandat 1265.374 kb on + strandat 1265.375 kb on - strandat 1265.440 kb on + strand, within RR42_RS05750at 1266.010 kb on + strandat 1266.010 kb on + strandat 1266.011 kb on - strandat 1266.037 kb on + strandat 1266.038 kb on - strandat 1266.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,263,291 - RR42_RS05740 0.42 +0.1
1,263,291 - RR42_RS05740 0.42 -0.3
1,263,291 - RR42_RS05740 0.42 -0.6
1,263,299 + RR42_RS05740 0.43 -0.1
1,263,299 + RR42_RS05740 0.43 -0.1
1,263,299 + RR42_RS05740 0.43 -0.6
1,263,299 + RR42_RS05740 0.43 -0.3
1,263,300 - RR42_RS05740 0.43 +0.0
1,263,300 - RR42_RS05740 0.43 +0.3
1,263,423 + RR42_RS05740 0.55 -2.0
1,263,424 - RR42_RS05740 0.55 -0.4
1,263,467 + RR42_RS05740 0.59 +0.2
1,263,730 + RR42_RS05740 0.85 +0.9
1,263,730 + RR42_RS05740 0.85 -0.7
1,263,731 - RR42_RS05740 0.86 -0.0
1,263,731 - RR42_RS05740 0.86 -0.3
1,263,731 - RR42_RS05740 0.86 +0.4
1,263,731 - RR42_RS05740 0.86 -0.6
1,263,731 - RR42_RS05740 0.86 +0.5
1,263,731 - RR42_RS05740 0.86 +1.0
1,263,754 - RR42_RS05740 0.88 -2.3
1,263,940 + -0.6
1,263,941 - +0.0
1,263,941 - +1.2
1,264,145 - +1.0
1,264,304 - RR42_RS05745 0.15 +1.4
1,264,348 + RR42_RS05745 0.19 +0.1
1,264,349 - RR42_RS05745 0.19 -0.2
1,264,352 + RR42_RS05745 0.19 -0.1
1,264,352 + RR42_RS05745 0.19 +0.4
1,264,353 - RR42_RS05745 0.19 +1.6
1,264,361 - RR42_RS05745 0.20 -0.0
1,264,361 - RR42_RS05745 0.20 -0.7
1,264,577 + RR42_RS05745 0.40 +0.1
1,264,577 + RR42_RS05745 0.40 -0.2
1,264,577 + RR42_RS05745 0.40 -0.2
1,264,578 - RR42_RS05745 0.40 +0.3
1,264,578 - RR42_RS05745 0.40 +0.2
1,264,601 + RR42_RS05745 0.43 +0.1
1,264,601 + RR42_RS05745 0.43 +0.1
1,264,602 - RR42_RS05745 0.43 +0.9
1,264,666 + RR42_RS05745 0.49 +0.4
1,264,666 + RR42_RS05745 0.49 +0.0
1,264,667 - RR42_RS05745 0.49 +0.4
1,264,667 - RR42_RS05745 0.49 +0.7
1,264,702 + RR42_RS05745 0.52 +0.6
1,264,702 + RR42_RS05745 0.52 +0.3
1,264,702 + RR42_RS05745 0.52 -0.3
1,264,702 + RR42_RS05745 0.52 +0.4
1,264,703 - RR42_RS05745 0.52 +3.0
1,264,744 + RR42_RS05745 0.56 +0.8
1,264,745 - RR42_RS05745 0.56 -1.8
1,264,789 + RR42_RS05745 0.60 -0.1
1,264,790 - RR42_RS05745 0.60 -0.0
1,264,790 - RR42_RS05745 0.60 +0.6
1,264,790 - RR42_RS05745 0.60 +0.4
1,264,870 + RR42_RS05745 0.68 +0.9
1,264,912 + RR42_RS05745 0.71 -2.3
1,264,912 + RR42_RS05745 0.71 +0.5
1,264,913 - RR42_RS05745 0.71 +0.2
1,264,913 - RR42_RS05745 0.71 -0.4
1,264,913 - RR42_RS05745 0.71 -0.6
1,265,032 + RR42_RS05745 0.83 +0.6
1,265,032 + RR42_RS05745 0.83 -0.6
1,265,033 - RR42_RS05745 0.83 -0.6
1,265,033 - RR42_RS05745 0.83 -0.1
1,265,266 + +0.0
1,265,267 - +0.4
1,265,267 - +0.5
1,265,319 + -0.2
1,265,319 + +1.6
1,265,319 + +1.0
1,265,319 + -0.1
1,265,319 + -0.2
1,265,319 + -0.8
1,265,319 + -0.1
1,265,320 - -0.3
1,265,320 - -0.2
1,265,320 - +0.1
1,265,320 - +0.5
1,265,338 + -0.7
1,265,374 + -0.5
1,265,375 - +1.0
1,265,440 + RR42_RS05750 0.14 +0.2
1,266,010 + +0.1
1,266,010 + -0.2
1,266,011 - -3.1
1,266,037 + +1.0
1,266,038 - +0.5
1,266,178 + -0.6

Or see this region's nucleotide sequence