Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04230 and RR42_RS04235 are separated by 788 nucleotides RR42_RS04235 and RR42_RS04240 are separated by 215 nucleotides RR42_RS04240 and RR42_RS04245 are separated by 446 nucleotides
RR42_RS04230: RR42_RS04230 - dihydrodipicolinate synthase, at 935,729 to 936,637
_RS04230
RR42_RS04235: RR42_RS04235 - glutamate-1-semialdehyde aminotransferase, at 937,426 to 938,715
_RS04235
RR42_RS04240: RR42_RS04240 - rubredoxin, at 938,931 to 939,101
_RS04240
RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042
_RS04245
Position (kb)
937
938
939 Strain fitness (log2 ratio)
-1
0
1
2 at 936.645 kb on - strand at 936.645 kb on - strand at 936.691 kb on + strand at 936.691 kb on + strand at 936.707 kb on + strand at 936.707 kb on + strand at 936.708 kb on - strand at 936.708 kb on - strand at 936.708 kb on - strand at 936.725 kb on + strand at 936.725 kb on + strand at 936.725 kb on + strand at 936.726 kb on - strand at 936.776 kb on - strand at 936.776 kb on - strand at 936.776 kb on - strand at 936.776 kb on - strand at 937.042 kb on + strand at 937.371 kb on - strand at 938.769 kb on - strand at 939.438 kb on - strand at 939.564 kb on + strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.565 kb on - strand at 939.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 936,645 - +1.1 936,645 - +0.7 936,691 + -0.1 936,691 + -1.1 936,707 + -0.9 936,707 + +0.3 936,708 - -0.3 936,708 - -0.2 936,708 - +2.7 936,725 + +1.0 936,725 + -0.1 936,725 + +0.5 936,726 - +0.1 936,776 - -0.6 936,776 - -0.7 936,776 - +1.8 936,776 - -0.5 937,042 + -0.3 937,371 - -0.4 938,769 - -0.7 939,438 - -1.3 939,564 + -0.6 939,565 - -1.1 939,565 - +0.5 939,565 - +0.4 939,565 - +0.6 939,575 - -0.8
Or see this region's nucleotide sequence