Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03075 and RR42_RS03080 are separated by 310 nucleotides RR42_RS03080 and RR42_RS03085 are separated by 179 nucleotides RR42_RS03085 and RR42_RS03090 are separated by 327 nucleotides
RR42_RS03075: RR42_RS03075 - transcriptional regulator, at 680,385 to 681,071
_RS03075
RR42_RS03080: RR42_RS03080 - recombinase RecA, at 681,382 to 682,455
_RS03080
RR42_RS03085: RR42_RS03085 - RecX family transcriptional regulator, at 682,635 to 683,102
_RS03085
RR42_RS03090: RR42_RS03090 - hypothetical protein, at 683,430 to 684,104
_RS03090
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 680.474 kb on - strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.490 kb on + strand, within RR42_RS03075 at 680.491 kb on - strand, within RR42_RS03075 at 680.491 kb on - strand, within RR42_RS03075 at 680.491 kb on - strand, within RR42_RS03075 at 680.494 kb on + strand, within RR42_RS03075 at 680.494 kb on + strand, within RR42_RS03075 at 680.495 kb on - strand, within RR42_RS03075 at 680.495 kb on - strand, within RR42_RS03075 at 680.647 kb on + strand, within RR42_RS03075 at 680.648 kb on - strand, within RR42_RS03075 at 680.779 kb on + strand, within RR42_RS03075 at 680.779 kb on + strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 680.780 kb on - strand, within RR42_RS03075 at 681.012 kb on + strand at 681.012 kb on + strand at 681.012 kb on + strand at 681.013 kb on - strand at 681.065 kb on + strand at 681.066 kb on - strand at 681.066 kb on - strand at 681.066 kb on - strand at 681.095 kb on + strand at 681.107 kb on + strand at 681.108 kb on - strand at 681.141 kb on + strand at 681.153 kb on - strand at 681.154 kb on + strand at 681.199 kb on + strand at 681.234 kb on - strand at 681.234 kb on - strand at 681.353 kb on - strand at 681.356 kb on + strand at 681.356 kb on + strand at 681.357 kb on - strand at 681.358 kb on + strand at 681.719 kb on - strand, within RR42_RS03080 at 682.164 kb on - strand, within RR42_RS03080 at 682.289 kb on - strand, within RR42_RS03080 at 682.333 kb on + strand, within RR42_RS03080 at 682.555 kb on - strand at 682.564 kb on + strand at 682.564 kb on + strand at 682.567 kb on - strand at 682.567 kb on - strand at 682.568 kb on + strand at 682.569 kb on - strand at 682.569 kb on - strand at 682.569 kb on - strand at 682.569 kb on - strand at 682.577 kb on + strand at 682.577 kb on + strand at 682.580 kb on - strand at 682.591 kb on - strand at 682.591 kb on - strand at 682.592 kb on + strand at 682.592 kb on + strand at 682.592 kb on + strand at 682.593 kb on - strand at 682.593 kb on - strand at 682.593 kb on - strand at 682.594 kb on + strand at 682.594 kb on + strand at 682.595 kb on - strand at 682.595 kb on - strand at 682.595 kb on - strand at 682.680 kb on + strand at 682.680 kb on + strand at 682.681 kb on - strand at 682.845 kb on + strand, within RR42_RS03085 at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.163 kb on - strand at 683.163 kb on - strand at 683.194 kb on + strand at 683.215 kb on + strand at 683.215 kb on + strand at 683.374 kb on - strand at 683.429 kb on + strand at 683.429 kb on + strand at 683.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 680,474 - RR42_RS03075 0.13 -0.1 680,490 + RR42_RS03075 0.15 +0.7 680,490 + RR42_RS03075 0.15 +0.3 680,490 + RR42_RS03075 0.15 -0.7 680,490 + RR42_RS03075 0.15 +0.4 680,491 - RR42_RS03075 0.15 -1.1 680,491 - RR42_RS03075 0.15 -0.6 680,491 - RR42_RS03075 0.15 +1.3 680,494 + RR42_RS03075 0.16 -0.8 680,494 + RR42_RS03075 0.16 +0.4 680,495 - RR42_RS03075 0.16 +0.0 680,495 - RR42_RS03075 0.16 +0.3 680,647 + RR42_RS03075 0.38 +0.2 680,648 - RR42_RS03075 0.38 -0.8 680,779 + RR42_RS03075 0.57 +0.6 680,779 + RR42_RS03075 0.57 +0.1 680,780 - RR42_RS03075 0.57 -0.0 680,780 - RR42_RS03075 0.57 +0.0 680,780 - RR42_RS03075 0.57 -0.5 680,780 - RR42_RS03075 0.57 -1.6 680,780 - RR42_RS03075 0.57 -0.8 680,780 - RR42_RS03075 0.57 +0.2 681,012 + -0.1 681,012 + -0.6 681,012 + -0.1 681,013 - +1.1 681,065 + -0.7 681,066 - -1.3 681,066 - +0.3 681,066 - -0.6 681,095 + +0.4 681,107 + -0.1 681,108 - -1.4 681,141 + -0.6 681,153 - -0.2 681,154 + -0.0 681,199 + -0.1 681,234 - -0.2 681,234 - +0.9 681,353 - -2.6 681,356 + +0.1 681,356 + +0.6 681,357 - -0.4 681,358 + +0.6 681,719 - RR42_RS03080 0.31 +0.2 682,164 - RR42_RS03080 0.73 -2.3 682,289 - RR42_RS03080 0.84 -1.8 682,333 + RR42_RS03080 0.89 -2.1 682,555 - +0.2 682,564 + +0.4 682,564 + +0.6 682,567 - +0.0 682,567 - -0.1 682,568 + -0.2 682,569 - +0.2 682,569 - -3.0 682,569 - +0.1 682,569 - +1.2 682,577 + -0.5 682,577 + -0.4 682,580 - +0.4 682,591 - +0.6 682,591 - +0.2 682,592 + +0.8 682,592 + -0.3 682,592 + +0.0 682,593 - +0.3 682,593 - -0.5 682,593 - +0.5 682,594 + +0.1 682,594 + +0.1 682,595 - +1.2 682,595 - +0.8 682,595 - +1.2 682,680 + +0.1 682,680 + -2.1 682,681 - +1.1 682,845 + RR42_RS03085 0.45 -0.9 683,162 + -1.4 683,162 + -2.3 683,162 + +0.3 683,162 + -0.8 683,162 + -0.3 683,162 + +0.1 683,163 - +0.4 683,163 - -0.3 683,194 + +0.7 683,215 + +0.7 683,215 + -1.8 683,374 - -0.1 683,429 + +0.9 683,429 + +0.4 683,430 - +1.2
Or see this region's nucleotide sequence