Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19180 and RALBFv3_RS19185 are separated by 141 nucleotides RALBFv3_RS19185 and RALBFv3_RS19190 are separated by 235 nucleotides
RALBFv3_RS19180: RALBFv3_RS19180 - rhomboid family intramembrane serine protease, at 881,245 to 881,838
_RS19180
RALBFv3_RS19185: RALBFv3_RS19185 - excinuclease ABC subunit A, at 881,980 to 887,817
_RS19185
RALBFv3_RS19190: RALBFv3_RS19190 - DNA helicase, at 888,053 to 893,554
_RS19190
Position (kb) 881
882
883
884
885
886
887
888 Strain fitness (log2 ratio) -2
-1
0
1
2 at 881.047 kb on - strand at 881.074 kb on + strand at 881.215 kb on + strand at 881.215 kb on + strand at 881.216 kb on - strand at 881.494 kb on - strand, within RALBFv3_RS19180 at 881.506 kb on + strand, within RALBFv3_RS19180 at 881.506 kb on + strand, within RALBFv3_RS19180 at 881.506 kb on + strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.507 kb on - strand, within RALBFv3_RS19180 at 881.624 kb on - strand, within RALBFv3_RS19180 at 881.988 kb on + strand at 881.988 kb on + strand at 881.989 kb on - strand at 882.755 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.448 kb on + strand, within RALBFv3_RS19185 at 883.449 kb on - strand, within RALBFv3_RS19185 at 883.548 kb on - strand, within RALBFv3_RS19185 at 883.548 kb on - strand, within RALBFv3_RS19185 at 883.928 kb on + strand, within RALBFv3_RS19185 at 883.929 kb on - strand, within RALBFv3_RS19185 at 883.959 kb on - strand, within RALBFv3_RS19185 at 884.253 kb on - strand, within RALBFv3_RS19185 at 884.542 kb on + strand, within RALBFv3_RS19185 at 884.544 kb on - strand, within RALBFv3_RS19185 at 885.476 kb on + strand, within RALBFv3_RS19185 at 885.477 kb on - strand, within RALBFv3_RS19185 at 885.477 kb on - strand, within RALBFv3_RS19185 at 885.644 kb on + strand, within RALBFv3_RS19185 at 885.990 kb on - strand, within RALBFv3_RS19185 at 886.329 kb on - strand, within RALBFv3_RS19185 at 886.352 kb on + strand, within RALBFv3_RS19185 at 886.353 kb on - strand, within RALBFv3_RS19185 at 886.645 kb on - strand, within RALBFv3_RS19185 at 886.646 kb on + strand, within RALBFv3_RS19185 at 886.647 kb on - strand, within RALBFv3_RS19185 at 886.656 kb on - strand, within RALBFv3_RS19185 at 886.688 kb on + strand, within RALBFv3_RS19185 at 886.688 kb on + strand, within RALBFv3_RS19185 at 886.706 kb on + strand, within RALBFv3_RS19185 at 887.123 kb on + strand, within RALBFv3_RS19185 at 887.124 kb on - strand, within RALBFv3_RS19185 at 887.222 kb on - strand, within RALBFv3_RS19185 at 887.285 kb on + strand at 887.405 kb on + strand at 887.406 kb on - strand at 887.675 kb on + strand at 887.675 kb on + strand at 887.900 kb on - strand at 888.206 kb on + strand at 888.207 kb on - strand at 888.431 kb on + strand at 888.516 kb on - strand at 888.519 kb on + strand at 888.520 kb on - strand at 888.520 kb on - strand at 888.580 kb on - strand at 888.654 kb on + strand, within RALBFv3_RS19190 at 888.774 kb on + strand, within RALBFv3_RS19190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 881,047 - -0.7 881,074 + +0.2 881,215 + +0.1 881,215 + +0.8 881,216 - +0.9 881,494 - RALBFv3_RS19180 0.42 -0.3 881,506 + RALBFv3_RS19180 0.44 +0.4 881,506 + RALBFv3_RS19180 0.44 +0.7 881,506 + RALBFv3_RS19180 0.44 -0.2 881,507 - RALBFv3_RS19180 0.44 -1.5 881,507 - RALBFv3_RS19180 0.44 +0.0 881,507 - RALBFv3_RS19180 0.44 +0.3 881,507 - RALBFv3_RS19180 0.44 +0.8 881,624 - RALBFv3_RS19180 0.64 +0.5 881,988 + +0.1 881,988 + -0.7 881,989 - -0.5 882,755 + RALBFv3_RS19185 0.13 -2.0 883,448 + RALBFv3_RS19185 0.25 -0.1 883,448 + RALBFv3_RS19185 0.25 +0.4 883,448 + RALBFv3_RS19185 0.25 +1.4 883,448 + RALBFv3_RS19185 0.25 -0.7 883,449 - RALBFv3_RS19185 0.25 -0.2 883,548 - RALBFv3_RS19185 0.27 -0.6 883,548 - RALBFv3_RS19185 0.27 -1.0 883,928 + RALBFv3_RS19185 0.33 +0.3 883,929 - RALBFv3_RS19185 0.33 -1.2 883,959 - RALBFv3_RS19185 0.34 +1.2 884,253 - RALBFv3_RS19185 0.39 -1.1 884,542 + RALBFv3_RS19185 0.44 +1.8 884,544 - RALBFv3_RS19185 0.44 +0.8 885,476 + RALBFv3_RS19185 0.60 +1.2 885,477 - RALBFv3_RS19185 0.60 +0.0 885,477 - RALBFv3_RS19185 0.60 +0.2 885,644 + RALBFv3_RS19185 0.63 +1.3 885,990 - RALBFv3_RS19185 0.69 -1.0 886,329 - RALBFv3_RS19185 0.74 +0.0 886,352 + RALBFv3_RS19185 0.75 +0.9 886,353 - RALBFv3_RS19185 0.75 +0.5 886,645 - RALBFv3_RS19185 0.80 -0.3 886,646 + RALBFv3_RS19185 0.80 +0.1 886,647 - RALBFv3_RS19185 0.80 -0.2 886,656 - RALBFv3_RS19185 0.80 +0.7 886,688 + RALBFv3_RS19185 0.81 +0.0 886,688 + RALBFv3_RS19185 0.81 +0.0 886,706 + RALBFv3_RS19185 0.81 +0.5 887,123 + RALBFv3_RS19185 0.88 +0.2 887,124 - RALBFv3_RS19185 0.88 -0.5 887,222 - RALBFv3_RS19185 0.90 -0.4 887,285 + -0.4 887,405 + -1.1 887,406 - -0.9 887,675 + +0.5 887,675 + +0.0 887,900 - +0.3 888,206 + +1.7 888,207 - +0.7 888,431 + +0.3 888,516 - +0.7 888,519 + +0.2 888,520 - +0.8 888,520 - +0.5 888,580 - +0.3 888,654 + RALBFv3_RS19190 0.11 +0.6 888,774 + RALBFv3_RS19190 0.13 +0.2
Or see this region's nucleotide sequence