Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19090 and RALBFv3_RS19095 are separated by 36 nucleotides RALBFv3_RS19095 and RALBFv3_RS19100 are separated by 12 nucleotides
RALBFv3_RS19090: RALBFv3_RS19090 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 856,784 to 857,911
_RS19090
RALBFv3_RS19095: RALBFv3_RS19095 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 857,948 to 859,219
_RS19095
RALBFv3_RS19100: RALBFv3_RS19100 - multidrug MFS transporter, at 859,232 to 860,542
_RS19100
Position (kb) 857
858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 856.964 kb on - strand, within RALBFv3_RS19090 at 856.988 kb on + strand, within RALBFv3_RS19090 at 857.006 kb on - strand, within RALBFv3_RS19090 at 857.109 kb on - strand, within RALBFv3_RS19090 at 857.109 kb on - strand, within RALBFv3_RS19090 at 857.300 kb on - strand, within RALBFv3_RS19090 at 857.384 kb on + strand, within RALBFv3_RS19090 at 857.384 kb on + strand, within RALBFv3_RS19090 at 857.764 kb on + strand, within RALBFv3_RS19090 at 857.765 kb on - strand, within RALBFv3_RS19090 at 857.765 kb on - strand, within RALBFv3_RS19090 at 857.852 kb on + strand at 857.900 kb on + strand at 857.900 kb on + strand at 857.954 kb on - strand at 858.002 kb on + strand at 858.003 kb on - strand at 858.003 kb on - strand at 858.254 kb on + strand, within RALBFv3_RS19095 at 858.254 kb on + strand, within RALBFv3_RS19095 at 858.255 kb on - strand, within RALBFv3_RS19095 at 858.255 kb on - strand, within RALBFv3_RS19095 at 858.255 kb on - strand, within RALBFv3_RS19095 at 858.257 kb on - strand, within RALBFv3_RS19095 at 858.539 kb on + strand, within RALBFv3_RS19095 at 858.857 kb on + strand, within RALBFv3_RS19095 at 858.858 kb on - strand, within RALBFv3_RS19095 at 859.031 kb on - strand, within RALBFv3_RS19095 at 859.031 kb on - strand, within RALBFv3_RS19095 at 859.180 kb on + strand at 859.398 kb on - strand, within RALBFv3_RS19100 at 859.398 kb on - strand, within RALBFv3_RS19100 at 859.398 kb on - strand, within RALBFv3_RS19100 at 859.560 kb on - strand, within RALBFv3_RS19100 at 859.560 kb on - strand, within RALBFv3_RS19100 at 859.560 kb on - strand, within RALBFv3_RS19100 at 860.043 kb on - strand, within RALBFv3_RS19100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 856,964 - RALBFv3_RS19090 0.16 -0.1 856,988 + RALBFv3_RS19090 0.18 -0.1 857,006 - RALBFv3_RS19090 0.20 +0.4 857,109 - RALBFv3_RS19090 0.29 +0.5 857,109 - RALBFv3_RS19090 0.29 -0.3 857,300 - RALBFv3_RS19090 0.46 +0.0 857,384 + RALBFv3_RS19090 0.53 +1.6 857,384 + RALBFv3_RS19090 0.53 +0.6 857,764 + RALBFv3_RS19090 0.87 -0.6 857,765 - RALBFv3_RS19090 0.87 +0.8 857,765 - RALBFv3_RS19090 0.87 +0.8 857,852 + +0.8 857,900 + -0.1 857,900 + +0.2 857,954 - +0.2 858,002 + -0.7 858,003 - +1.1 858,003 - +0.4 858,254 + RALBFv3_RS19095 0.24 +1.6 858,254 + RALBFv3_RS19095 0.24 -0.3 858,255 - RALBFv3_RS19095 0.24 -0.0 858,255 - RALBFv3_RS19095 0.24 +0.0 858,255 - RALBFv3_RS19095 0.24 +0.8 858,257 - RALBFv3_RS19095 0.24 -0.3 858,539 + RALBFv3_RS19095 0.46 +0.0 858,857 + RALBFv3_RS19095 0.71 -0.3 858,858 - RALBFv3_RS19095 0.72 -1.4 859,031 - RALBFv3_RS19095 0.85 -0.6 859,031 - RALBFv3_RS19095 0.85 +0.4 859,180 + -0.9 859,398 - RALBFv3_RS19100 0.13 +0.2 859,398 - RALBFv3_RS19100 0.13 -2.5 859,398 - RALBFv3_RS19100 0.13 -0.4 859,560 - RALBFv3_RS19100 0.25 -0.6 859,560 - RALBFv3_RS19100 0.25 +0.3 859,560 - RALBFv3_RS19100 0.25 -0.1 860,043 - RALBFv3_RS19100 0.62 -2.8
Or see this region's nucleotide sequence