Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17770 and RALBFv3_RS17775 are separated by 92 nucleotides RALBFv3_RS17775 and RALBFv3_RS17780 are separated by 3 nucleotides RALBFv3_RS17780 and RALBFv3_RS17785 are separated by 94 nucleotides
RALBFv3_RS17770: RALBFv3_RS17770 - LysR family transcriptional regulator, at 490,922 to 491,872
_RS17770
RALBFv3_RS17775: RALBFv3_RS17775 - MFS transporter, at 491,965 to 493,536
_RS17775
RALBFv3_RS17780: RALBFv3_RS17780 - DUF2236 domain-containing protein, at 493,540 to 494,436
_RS17780
RALBFv3_RS17785: RALBFv3_RS17785 - type II toxin-antitoxin system HipA family toxin, at 494,531 to 495,877
_RS17785
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.118 kb on - strand, within RALBFv3_RS17770 at 491.118 kb on - strand, within RALBFv3_RS17770 at 491.338 kb on - strand, within RALBFv3_RS17770 at 491.570 kb on + strand, within RALBFv3_RS17770 at 491.570 kb on + strand, within RALBFv3_RS17770 at 491.837 kb on + strand at 491.898 kb on + strand at 492.194 kb on - strand, within RALBFv3_RS17775 at 492.227 kb on - strand, within RALBFv3_RS17775 at 492.247 kb on + strand, within RALBFv3_RS17775 at 492.500 kb on - strand, within RALBFv3_RS17775 at 492.511 kb on + strand, within RALBFv3_RS17775 at 492.511 kb on + strand, within RALBFv3_RS17775 at 492.607 kb on + strand, within RALBFv3_RS17775 at 492.607 kb on + strand, within RALBFv3_RS17775 at 492.608 kb on - strand, within RALBFv3_RS17775 at 492.608 kb on - strand, within RALBFv3_RS17775 at 492.608 kb on - strand, within RALBFv3_RS17775 at 493.021 kb on + strand, within RALBFv3_RS17775 at 493.021 kb on + strand, within RALBFv3_RS17775 at 493.845 kb on - strand, within RALBFv3_RS17780 at 493.953 kb on + strand, within RALBFv3_RS17780 at 493.954 kb on - strand, within RALBFv3_RS17780 at 493.961 kb on + strand, within RALBFv3_RS17780 at 493.962 kb on - strand, within RALBFv3_RS17780 at 493.962 kb on - strand, within RALBFv3_RS17780 at 494.129 kb on + strand, within RALBFv3_RS17780 at 494.129 kb on + strand, within RALBFv3_RS17780 at 494.130 kb on - strand, within RALBFv3_RS17780 at 494.464 kb on - strand at 494.481 kb on + strand at 494.482 kb on - strand at 494.482 kb on - strand at 494.492 kb on + strand at 494.493 kb on - strand at 494.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 491,118 - RALBFv3_RS17770 0.21 +2.1 491,118 - RALBFv3_RS17770 0.21 +0.8 491,338 - RALBFv3_RS17770 0.44 +1.1 491,570 + RALBFv3_RS17770 0.68 +0.4 491,570 + RALBFv3_RS17770 0.68 +1.6 491,837 + +0.5 491,898 + +0.3 492,194 - RALBFv3_RS17775 0.15 +0.5 492,227 - RALBFv3_RS17775 0.17 -0.2 492,247 + RALBFv3_RS17775 0.18 +0.3 492,500 - RALBFv3_RS17775 0.34 +1.3 492,511 + RALBFv3_RS17775 0.35 +1.3 492,511 + RALBFv3_RS17775 0.35 -0.2 492,607 + RALBFv3_RS17775 0.41 -0.4 492,607 + RALBFv3_RS17775 0.41 -0.7 492,608 - RALBFv3_RS17775 0.41 -1.8 492,608 - RALBFv3_RS17775 0.41 -0.5 492,608 - RALBFv3_RS17775 0.41 -0.7 493,021 + RALBFv3_RS17775 0.67 -0.3 493,021 + RALBFv3_RS17775 0.67 +1.8 493,845 - RALBFv3_RS17780 0.34 +1.5 493,953 + RALBFv3_RS17780 0.46 -1.0 493,954 - RALBFv3_RS17780 0.46 -0.2 493,961 + RALBFv3_RS17780 0.47 +2.3 493,962 - RALBFv3_RS17780 0.47 -0.0 493,962 - RALBFv3_RS17780 0.47 +0.3 494,129 + RALBFv3_RS17780 0.66 +0.5 494,129 + RALBFv3_RS17780 0.66 +1.7 494,130 - RALBFv3_RS17780 0.66 -0.4 494,464 - +0.4 494,481 + +0.6 494,482 - +0.1 494,482 - -0.5 494,492 + +0.8 494,493 - -0.1 494,493 - +1.2
Or see this region's nucleotide sequence