Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS17550

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS17540 and RALBFv3_RS17545 are separated by 286 nucleotidesRALBFv3_RS17545 and RALBFv3_RS17550 are separated by 66 nucleotidesRALBFv3_RS17550 and RALBFv3_RS17555 are separated by 286 nucleotidesRALBFv3_RS17555 and RALBFv3_RS17560 are separated by 106 nucleotides RALBFv3_RS17540: RALBFv3_RS17540 - DUF2334 domain-containing protein, at 430,382 to 432,127 _RS17540 RALBFv3_RS17545: RALBFv3_RS17545 - alkylphosphonate utilization protein, at 432,414 to 432,755 _RS17545 RALBFv3_RS17550: RALBFv3_RS17550 - mercuric reductase, at 432,822 to 434,201 _RS17550 RALBFv3_RS17555: RALBFv3_RS17555 - hypothetical protein, at 434,488 to 434,961 _RS17555 RALBFv3_RS17560: RALBFv3_RS17560 - type III effector protein skwp2, at 435,068 to 442,627 _RS17560 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2 3at 431.822 kb on + strand, within RALBFv3_RS17540at 431.823 kb on - strand, within RALBFv3_RS17540at 431.823 kb on - strand, within RALBFv3_RS17540at 431.843 kb on + strand, within RALBFv3_RS17540at 431.843 kb on + strand, within RALBFv3_RS17540at 431.844 kb on - strand, within RALBFv3_RS17540at 431.885 kb on + strand, within RALBFv3_RS17540at 431.885 kb on + strand, within RALBFv3_RS17540at 431.885 kb on + strand, within RALBFv3_RS17540at 431.886 kb on - strand, within RALBFv3_RS17540at 431.886 kb on - strand, within RALBFv3_RS17540at 431.925 kb on - strand, within RALBFv3_RS17540at 431.925 kb on - strand, within RALBFv3_RS17540at 431.942 kb on + strand, within RALBFv3_RS17540at 431.943 kb on - strand, within RALBFv3_RS17540at 432.095 kb on + strandat 432.095 kb on + strandat 432.116 kb on - strandat 432.126 kb on - strandat 432.202 kb on + strandat 432.202 kb on + strandat 432.202 kb on + strandat 432.203 kb on - strandat 432.367 kb on + strandat 432.368 kb on - strandat 432.369 kb on + strandat 432.369 kb on + strandat 432.370 kb on - strandat 432.370 kb on - strandat 432.370 kb on - strandat 432.370 kb on - strandat 432.370 kb on - strandat 432.459 kb on + strand, within RALBFv3_RS17545at 432.459 kb on + strand, within RALBFv3_RS17545at 432.460 kb on - strand, within RALBFv3_RS17545at 432.460 kb on - strand, within RALBFv3_RS17545at 432.477 kb on + strand, within RALBFv3_RS17545at 432.477 kb on + strand, within RALBFv3_RS17545at 432.478 kb on - strand, within RALBFv3_RS17545at 432.478 kb on - strand, within RALBFv3_RS17545at 432.478 kb on - strand, within RALBFv3_RS17545at 432.478 kb on - strand, within RALBFv3_RS17545at 432.480 kb on - strand, within RALBFv3_RS17545at 432.480 kb on - strand, within RALBFv3_RS17545at 432.502 kb on + strand, within RALBFv3_RS17545at 432.550 kb on - strand, within RALBFv3_RS17545at 432.910 kb on + strandat 432.910 kb on + strandat 432.911 kb on - strandat 432.911 kb on - strandat 432.925 kb on + strandat 432.926 kb on - strandat 432.926 kb on - strandat 432.926 kb on - strandat 432.926 kb on - strandat 432.930 kb on + strandat 432.930 kb on + strandat 432.930 kb on + strandat 432.931 kb on - strandat 432.931 kb on - strandat 433.244 kb on - strand, within RALBFv3_RS17550at 433.244 kb on - strand, within RALBFv3_RS17550at 433.636 kb on + strand, within RALBFv3_RS17550at 433.637 kb on - strand, within RALBFv3_RS17550at 433.663 kb on + strand, within RALBFv3_RS17550at 433.663 kb on + strand, within RALBFv3_RS17550at 433.663 kb on + strand, within RALBFv3_RS17550at 433.663 kb on + strand, within RALBFv3_RS17550at 433.663 kb on + strand, within RALBFv3_RS17550at 433.663 kb on + strand, within RALBFv3_RS17550at 433.664 kb on - strand, within RALBFv3_RS17550at 433.664 kb on - strand, within RALBFv3_RS17550at 433.733 kb on - strand, within RALBFv3_RS17550at 433.733 kb on - strand, within RALBFv3_RS17550at 433.868 kb on - strand, within RALBFv3_RS17550at 434.029 kb on + strand, within RALBFv3_RS17550at 434.030 kb on - strand, within RALBFv3_RS17550at 434.288 kb on - strandat 434.292 kb on + strandat 434.293 kb on - strandat 434.293 kb on - strandat 434.429 kb on - strandat 434.435 kb on - strandat 434.711 kb on - strand, within RALBFv3_RS17555at 434.728 kb on - strand, within RALBFv3_RS17555at 434.785 kb on + strand, within RALBFv3_RS17555at 434.786 kb on - strand, within RALBFv3_RS17555at 434.786 kb on - strand, within RALBFv3_RS17555at 434.786 kb on - strand, within RALBFv3_RS17555at 434.839 kb on + strand, within RALBFv3_RS17555at 434.839 kb on + strand, within RALBFv3_RS17555at 434.842 kb on + strand, within RALBFv3_RS17555at 434.854 kb on + strand, within RALBFv3_RS17555at 434.857 kb on + strand, within RALBFv3_RS17555at 434.857 kb on + strand, within RALBFv3_RS17555at 434.857 kb on + strand, within RALBFv3_RS17555at 434.857 kb on + strand, within RALBFv3_RS17555at 434.857 kb on + strand, within RALBFv3_RS17555at 434.858 kb on - strand, within RALBFv3_RS17555at 434.899 kb on + strand, within RALBFv3_RS17555at 434.899 kb on + strand, within RALBFv3_RS17555at 434.899 kb on + strand, within RALBFv3_RS17555at 434.899 kb on + strand, within RALBFv3_RS17555at 434.899 kb on + strand, within RALBFv3_RS17555at 434.900 kb on - strand, within RALBFv3_RS17555at 434.900 kb on - strand, within RALBFv3_RS17555at 434.900 kb on - strand, within RALBFv3_RS17555at 434.900 kb on - strand, within RALBFv3_RS17555at 434.900 kb on - strand, within RALBFv3_RS17555at 434.944 kb on + strandat 434.944 kb on + strandat 434.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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431,822 + RALBFv3_RS17540 0.82 +0.4
431,823 - RALBFv3_RS17540 0.83 +1.2
431,823 - RALBFv3_RS17540 0.83 +0.5
431,843 + RALBFv3_RS17540 0.84 +0.8
431,843 + RALBFv3_RS17540 0.84 +1.1
431,844 - RALBFv3_RS17540 0.84 -0.1
431,885 + RALBFv3_RS17540 0.86 +0.8
431,885 + RALBFv3_RS17540 0.86 -0.5
431,885 + RALBFv3_RS17540 0.86 +0.9
431,886 - RALBFv3_RS17540 0.86 -0.2
431,886 - RALBFv3_RS17540 0.86 +3.7
431,925 - RALBFv3_RS17540 0.88 -1.1
431,925 - RALBFv3_RS17540 0.88 +0.0
431,942 + RALBFv3_RS17540 0.89 +0.3
431,943 - RALBFv3_RS17540 0.89 -0.1
432,095 + -0.0
432,095 + -0.2
432,116 - -0.3
432,126 - +0.3
432,202 + -1.7
432,202 + -0.5
432,202 + +0.2
432,203 - +0.2
432,367 + -0.4
432,368 - +1.1
432,369 + +0.3
432,369 + +1.0
432,370 - -0.6
432,370 - +0.9
432,370 - -0.0
432,370 - -0.2
432,370 - +2.0
432,459 + RALBFv3_RS17545 0.13 +1.1
432,459 + RALBFv3_RS17545 0.13 +0.4
432,460 - RALBFv3_RS17545 0.13 -0.2
432,460 - RALBFv3_RS17545 0.13 -1.0
432,477 + RALBFv3_RS17545 0.18 -1.3
432,477 + RALBFv3_RS17545 0.18 -0.1
432,478 - RALBFv3_RS17545 0.19 -1.8
432,478 - RALBFv3_RS17545 0.19 -0.0
432,478 - RALBFv3_RS17545 0.19 -0.6
432,478 - RALBFv3_RS17545 0.19 +0.6
432,480 - RALBFv3_RS17545 0.19 -0.1
432,480 - RALBFv3_RS17545 0.19 +0.7
432,502 + RALBFv3_RS17545 0.26 -0.1
432,550 - RALBFv3_RS17545 0.40 -1.9
432,910 + -0.1
432,910 + -0.8
432,911 - -0.7
432,911 - -0.0
432,925 + +1.1
432,926 - -0.5
432,926 - -1.1
432,926 - -0.8
432,926 - -0.1
432,930 + -0.1
432,930 + +1.2
432,930 + +0.3
432,931 - -0.2
432,931 - +1.6
433,244 - RALBFv3_RS17550 0.31 +0.5
433,244 - RALBFv3_RS17550 0.31 +0.1
433,636 + RALBFv3_RS17550 0.59 +1.2
433,637 - RALBFv3_RS17550 0.59 -0.2
433,663 + RALBFv3_RS17550 0.61 -0.3
433,663 + RALBFv3_RS17550 0.61 +0.9
433,663 + RALBFv3_RS17550 0.61 +0.1
433,663 + RALBFv3_RS17550 0.61 +0.1
433,663 + RALBFv3_RS17550 0.61 +2.4
433,663 + RALBFv3_RS17550 0.61 -0.7
433,664 - RALBFv3_RS17550 0.61 -0.5
433,664 - RALBFv3_RS17550 0.61 -1.0
433,733 - RALBFv3_RS17550 0.66 +0.3
433,733 - RALBFv3_RS17550 0.66 +1.1
433,868 - RALBFv3_RS17550 0.76 +0.8
434,029 + RALBFv3_RS17550 0.87 -0.7
434,030 - RALBFv3_RS17550 0.88 +1.0
434,288 - -0.6
434,292 + +0.4
434,293 - -0.4
434,293 - -0.0
434,429 - -0.5
434,435 - -0.8
434,711 - RALBFv3_RS17555 0.47 +0.6
434,728 - RALBFv3_RS17555 0.51 -0.0
434,785 + RALBFv3_RS17555 0.63 +0.9
434,786 - RALBFv3_RS17555 0.63 +1.2
434,786 - RALBFv3_RS17555 0.63 +0.0
434,786 - RALBFv3_RS17555 0.63 +0.7
434,839 + RALBFv3_RS17555 0.74 +0.3
434,839 + RALBFv3_RS17555 0.74 +0.6
434,842 + RALBFv3_RS17555 0.75 +0.0
434,854 + RALBFv3_RS17555 0.77 -0.3
434,857 + RALBFv3_RS17555 0.78 -2.3
434,857 + RALBFv3_RS17555 0.78 -0.1
434,857 + RALBFv3_RS17555 0.78 +0.9
434,857 + RALBFv3_RS17555 0.78 -0.1
434,857 + RALBFv3_RS17555 0.78 -0.1
434,858 - RALBFv3_RS17555 0.78 +0.5
434,899 + RALBFv3_RS17555 0.87 +1.2
434,899 + RALBFv3_RS17555 0.87 +0.2
434,899 + RALBFv3_RS17555 0.87 -0.9
434,899 + RALBFv3_RS17555 0.87 +1.1
434,899 + RALBFv3_RS17555 0.87 +0.2
434,900 - RALBFv3_RS17555 0.87 -0.1
434,900 - RALBFv3_RS17555 0.87 -0.3
434,900 - RALBFv3_RS17555 0.87 +1.1
434,900 - RALBFv3_RS17555 0.87 +0.3
434,900 - RALBFv3_RS17555 0.87 -0.1
434,944 + +0.5
434,944 + -0.8
434,945 - -0.6

Or see this region's nucleotide sequence