Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16815

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16815 and RALBFv3_RS16820 are separated by 33 nucleotides RALBFv3_RS16815: RALBFv3_RS16815 - iron-containing redox enzyme family protein, at 251,648 to 253,717 _RS16815 RALBFv3_RS16820: RALBFv3_RS16820 - hypothetical protein, at 253,751 to 255,601 _RS16820 Position (kb) 251 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2at 250.775 kb on + strandat 250.776 kb on - strandat 250.776 kb on - strandat 250.957 kb on + strandat 251.085 kb on - strandat 251.085 kb on - strandat 251.102 kb on + strandat 251.184 kb on + strandat 251.185 kb on - strandat 251.203 kb on + strandat 251.203 kb on + strandat 251.204 kb on - strandat 251.204 kb on - strandat 251.204 kb on - strandat 251.256 kb on + strandat 251.435 kb on + strandat 251.447 kb on + strandat 251.448 kb on - strandat 251.680 kb on + strandat 251.680 kb on + strandat 251.895 kb on - strand, within RALBFv3_RS16815at 252.017 kb on + strand, within RALBFv3_RS16815at 252.017 kb on + strand, within RALBFv3_RS16815at 252.018 kb on - strand, within RALBFv3_RS16815at 252.018 kb on - strand, within RALBFv3_RS16815at 252.018 kb on - strand, within RALBFv3_RS16815at 252.098 kb on + strand, within RALBFv3_RS16815at 252.098 kb on + strand, within RALBFv3_RS16815at 252.099 kb on - strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.302 kb on + strand, within RALBFv3_RS16815at 252.303 kb on - strand, within RALBFv3_RS16815at 252.303 kb on - strand, within RALBFv3_RS16815at 252.303 kb on - strand, within RALBFv3_RS16815at 252.303 kb on - strand, within RALBFv3_RS16815at 252.303 kb on - strand, within RALBFv3_RS16815at 252.303 kb on - strand, within RALBFv3_RS16815at 252.303 kb on - strand, within RALBFv3_RS16815at 252.403 kb on - strand, within RALBFv3_RS16815at 252.448 kb on + strand, within RALBFv3_RS16815at 252.448 kb on + strand, within RALBFv3_RS16815at 252.448 kb on + strand, within RALBFv3_RS16815at 252.841 kb on - strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.857 kb on + strand, within RALBFv3_RS16815at 252.858 kb on - strand, within RALBFv3_RS16815at 252.858 kb on - strand, within RALBFv3_RS16815at 252.858 kb on - strand, within RALBFv3_RS16815at 252.858 kb on - strand, within RALBFv3_RS16815at 252.858 kb on - strand, within RALBFv3_RS16815at 252.861 kb on - strand, within RALBFv3_RS16815at 252.949 kb on + strand, within RALBFv3_RS16815at 252.950 kb on - strand, within RALBFv3_RS16815at 252.986 kb on + strand, within RALBFv3_RS16815at 252.986 kb on + strand, within RALBFv3_RS16815at 252.986 kb on + strand, within RALBFv3_RS16815at 252.986 kb on + strand, within RALBFv3_RS16815at 252.986 kb on + strand, within RALBFv3_RS16815at 252.986 kb on + strand, within RALBFv3_RS16815at 252.987 kb on - strand, within RALBFv3_RS16815at 252.987 kb on - strand, within RALBFv3_RS16815at 253.046 kb on + strand, within RALBFv3_RS16815at 253.047 kb on - strand, within RALBFv3_RS16815at 253.047 kb on - strand, within RALBFv3_RS16815at 253.047 kb on - strand, within RALBFv3_RS16815at 253.196 kb on + strand, within RALBFv3_RS16815at 253.197 kb on + strand, within RALBFv3_RS16815at 253.197 kb on - strand, within RALBFv3_RS16815at 253.197 kb on - strand, within RALBFv3_RS16815at 253.197 kb on - strand, within RALBFv3_RS16815at 253.197 kb on - strand, within RALBFv3_RS16815at 253.197 kb on - strand, within RALBFv3_RS16815at 253.394 kb on + strand, within RALBFv3_RS16815at 253.394 kb on + strand, within RALBFv3_RS16815at 253.395 kb on - strand, within RALBFv3_RS16815at 253.395 kb on - strand, within RALBFv3_RS16815at 253.516 kb on + strandat 253.516 kb on + strandat 253.769 kb on + strandat 253.770 kb on - strandat 253.794 kb on - strandat 253.908 kb on - strandat 253.908 kb on - strandat 253.956 kb on - strand, within RALBFv3_RS16820at 253.958 kb on + strand, within RALBFv3_RS16820at 253.959 kb on - strand, within RALBFv3_RS16820at 253.959 kb on - strand, within RALBFv3_RS16820at 253.959 kb on - strand, within RALBFv3_RS16820at 253.961 kb on + strand, within RALBFv3_RS16820at 253.961 kb on + strand, within RALBFv3_RS16820at 253.961 kb on + strand, within RALBFv3_RS16820at 253.962 kb on - strand, within RALBFv3_RS16820at 254.003 kb on + strand, within RALBFv3_RS16820at 254.004 kb on - strand, within RALBFv3_RS16820at 254.004 kb on - strand, within RALBFv3_RS16820at 254.004 kb on - strand, within RALBFv3_RS16820at 254.147 kb on + strand, within RALBFv3_RS16820at 254.147 kb on + strand, within RALBFv3_RS16820at 254.147 kb on + strand, within RALBFv3_RS16820at 254.147 kb on + strand, within RALBFv3_RS16820at 254.147 kb on + strand, within RALBFv3_RS16820at 254.147 kb on + strand, within RALBFv3_RS16820at 254.148 kb on - strand, within RALBFv3_RS16820at 254.148 kb on - strand, within RALBFv3_RS16820at 254.148 kb on - strand, within RALBFv3_RS16820at 254.148 kb on - strand, within RALBFv3_RS16820at 254.328 kb on - strand, within RALBFv3_RS16820at 254.342 kb on + strand, within RALBFv3_RS16820at 254.342 kb on + strand, within RALBFv3_RS16820at 254.342 kb on + strand, within RALBFv3_RS16820at 254.342 kb on + strand, within RALBFv3_RS16820at 254.342 kb on + strand, within RALBFv3_RS16820at 254.343 kb on - strand, within RALBFv3_RS16820at 254.343 kb on - strand, within RALBFv3_RS16820at 254.343 kb on - strand, within RALBFv3_RS16820at 254.343 kb on - strand, within RALBFv3_RS16820at 254.343 kb on - strand, within RALBFv3_RS16820at 254.345 kb on + strand, within RALBFv3_RS16820at 254.346 kb on - strand, within RALBFv3_RS16820at 254.376 kb on - strand, within RALBFv3_RS16820at 254.376 kb on - strand, within RALBFv3_RS16820at 254.376 kb on - strand, within RALBFv3_RS16820at 254.376 kb on - strand, within RALBFv3_RS16820at 254.414 kb on + strand, within RALBFv3_RS16820at 254.414 kb on + strand, within RALBFv3_RS16820at 254.484 kb on - strand, within RALBFv3_RS16820at 254.492 kb on + strand, within RALBFv3_RS16820

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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250,775 + -0.6
250,776 - -0.3
250,776 - -0.3
250,957 + -0.5
251,085 - +0.9
251,085 - +0.4
251,102 + -2.0
251,184 + -0.2
251,185 - -0.5
251,203 + -1.1
251,203 + +0.0
251,204 - +0.6
251,204 - +0.1
251,204 - +0.8
251,256 + +0.3
251,435 + -0.6
251,447 + +0.1
251,448 - +0.2
251,680 + -0.3
251,680 + -0.5
251,895 - RALBFv3_RS16815 0.12 -0.0
252,017 + RALBFv3_RS16815 0.18 -0.9
252,017 + RALBFv3_RS16815 0.18 +0.2
252,018 - RALBFv3_RS16815 0.18 -1.8
252,018 - RALBFv3_RS16815 0.18 -0.1
252,018 - RALBFv3_RS16815 0.18 +1.0
252,098 + RALBFv3_RS16815 0.22 +0.0
252,098 + RALBFv3_RS16815 0.22 -0.4
252,099 - RALBFv3_RS16815 0.22 -0.8
252,302 + RALBFv3_RS16815 0.32 -1.3
252,302 + RALBFv3_RS16815 0.32 -0.1
252,302 + RALBFv3_RS16815 0.32 +1.2
252,302 + RALBFv3_RS16815 0.32 +1.1
252,302 + RALBFv3_RS16815 0.32 +0.7
252,302 + RALBFv3_RS16815 0.32 -0.9
252,302 + RALBFv3_RS16815 0.32 +0.8
252,302 + RALBFv3_RS16815 0.32 -0.5
252,302 + RALBFv3_RS16815 0.32 -0.9
252,303 - RALBFv3_RS16815 0.32 -0.3
252,303 - RALBFv3_RS16815 0.32 -0.0
252,303 - RALBFv3_RS16815 0.32 +0.7
252,303 - RALBFv3_RS16815 0.32 -0.8
252,303 - RALBFv3_RS16815 0.32 -1.0
252,303 - RALBFv3_RS16815 0.32 -0.3
252,303 - RALBFv3_RS16815 0.32 -0.2
252,403 - RALBFv3_RS16815 0.36 +0.2
252,448 + RALBFv3_RS16815 0.39 -0.9
252,448 + RALBFv3_RS16815 0.39 -0.5
252,448 + RALBFv3_RS16815 0.39 +0.4
252,841 - RALBFv3_RS16815 0.58 +0.1
252,857 + RALBFv3_RS16815 0.58 +0.9
252,857 + RALBFv3_RS16815 0.58 -0.3
252,857 + RALBFv3_RS16815 0.58 -0.3
252,857 + RALBFv3_RS16815 0.58 -0.5
252,857 + RALBFv3_RS16815 0.58 -0.5
252,857 + RALBFv3_RS16815 0.58 +2.3
252,857 + RALBFv3_RS16815 0.58 -0.6
252,857 + RALBFv3_RS16815 0.58 -1.2
252,858 - RALBFv3_RS16815 0.58 +0.6
252,858 - RALBFv3_RS16815 0.58 +0.4
252,858 - RALBFv3_RS16815 0.58 +2.5
252,858 - RALBFv3_RS16815 0.58 -0.5
252,858 - RALBFv3_RS16815 0.58 +0.4
252,861 - RALBFv3_RS16815 0.59 -0.2
252,949 + RALBFv3_RS16815 0.63 +0.4
252,950 - RALBFv3_RS16815 0.63 -0.8
252,986 + RALBFv3_RS16815 0.65 -0.8
252,986 + RALBFv3_RS16815 0.65 -1.2
252,986 + RALBFv3_RS16815 0.65 -0.0
252,986 + RALBFv3_RS16815 0.65 -0.3
252,986 + RALBFv3_RS16815 0.65 -1.4
252,986 + RALBFv3_RS16815 0.65 -1.0
252,987 - RALBFv3_RS16815 0.65 -0.4
252,987 - RALBFv3_RS16815 0.65 -0.4
253,046 + RALBFv3_RS16815 0.68 +0.2
253,047 - RALBFv3_RS16815 0.68 +0.2
253,047 - RALBFv3_RS16815 0.68 -0.5
253,047 - RALBFv3_RS16815 0.68 +1.7
253,196 + RALBFv3_RS16815 0.75 -1.1
253,197 + RALBFv3_RS16815 0.75 -0.8
253,197 - RALBFv3_RS16815 0.75 -1.0
253,197 - RALBFv3_RS16815 0.75 -1.7
253,197 - RALBFv3_RS16815 0.75 -0.8
253,197 - RALBFv3_RS16815 0.75 -0.2
253,197 - RALBFv3_RS16815 0.75 -0.1
253,394 + RALBFv3_RS16815 0.84 +1.3
253,394 + RALBFv3_RS16815 0.84 +0.0
253,395 - RALBFv3_RS16815 0.84 -0.5
253,395 - RALBFv3_RS16815 0.84 +1.4
253,516 + +1.5
253,516 + -0.7
253,769 + +0.3
253,770 - +0.5
253,794 - -0.2
253,908 - +1.5
253,908 - -1.0
253,956 - RALBFv3_RS16820 0.11 +0.3
253,958 + RALBFv3_RS16820 0.11 +1.1
253,959 - RALBFv3_RS16820 0.11 -0.5
253,959 - RALBFv3_RS16820 0.11 -1.0
253,959 - RALBFv3_RS16820 0.11 +0.4
253,961 + RALBFv3_RS16820 0.11 -0.8
253,961 + RALBFv3_RS16820 0.11 -0.3
253,961 + RALBFv3_RS16820 0.11 -0.8
253,962 - RALBFv3_RS16820 0.11 -1.1
254,003 + RALBFv3_RS16820 0.14 -0.7
254,004 - RALBFv3_RS16820 0.14 +1.0
254,004 - RALBFv3_RS16820 0.14 +1.5
254,004 - RALBFv3_RS16820 0.14 +0.9
254,147 + RALBFv3_RS16820 0.21 -1.2
254,147 + RALBFv3_RS16820 0.21 -0.1
254,147 + RALBFv3_RS16820 0.21 -2.2
254,147 + RALBFv3_RS16820 0.21 -0.7
254,147 + RALBFv3_RS16820 0.21 -0.7
254,147 + RALBFv3_RS16820 0.21 +0.2
254,148 - RALBFv3_RS16820 0.21 -1.4
254,148 - RALBFv3_RS16820 0.21 +0.7
254,148 - RALBFv3_RS16820 0.21 -0.2
254,148 - RALBFv3_RS16820 0.21 -0.4
254,328 - RALBFv3_RS16820 0.31 -0.4
254,342 + RALBFv3_RS16820 0.32 +0.5
254,342 + RALBFv3_RS16820 0.32 +1.0
254,342 + RALBFv3_RS16820 0.32 -0.5
254,342 + RALBFv3_RS16820 0.32 -0.5
254,342 + RALBFv3_RS16820 0.32 -0.4
254,343 - RALBFv3_RS16820 0.32 -0.2
254,343 - RALBFv3_RS16820 0.32 +1.1
254,343 - RALBFv3_RS16820 0.32 -0.7
254,343 - RALBFv3_RS16820 0.32 -0.6
254,343 - RALBFv3_RS16820 0.32 -0.9
254,345 + RALBFv3_RS16820 0.32 -0.9
254,346 - RALBFv3_RS16820 0.32 -1.6
254,376 - RALBFv3_RS16820 0.34 +0.2
254,376 - RALBFv3_RS16820 0.34 +0.4
254,376 - RALBFv3_RS16820 0.34 +0.2
254,376 - RALBFv3_RS16820 0.34 +0.4
254,414 + RALBFv3_RS16820 0.36 +0.7
254,414 + RALBFv3_RS16820 0.36 +1.6
254,484 - RALBFv3_RS16820 0.40 +1.5
254,492 + RALBFv3_RS16820 0.40 -0.6

Or see this region's nucleotide sequence