Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16130 and RALBFv3_RS16135 are separated by 159 nucleotides RALBFv3_RS16135 and RALBFv3_RS16140 overlap by 32 nucleotides RALBFv3_RS16140 and RALBFv3_RS16145 are separated by 42 nucleotides
RALBFv3_RS16130: RALBFv3_RS16130 - altronate dehydratase, at 60,005 to 61,564
_RS16130
RALBFv3_RS16135: RALBFv3_RS16135 - MFS transporter, at 61,724 to 63,070
_RS16135
RALBFv3_RS16140: RALBFv3_RS16140 - 4-hydroxy-2-oxoheptanedioate aldolase, at 63,039 to 63,833
_RS16140
RALBFv3_RS16145: RALBFv3_RS16145 - tartrate dehydrogenase, at 63,876 to 64,961
_RS16145
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 60.751 kb on + strand, within RALBFv3_RS16130 at 60.751 kb on + strand, within RALBFv3_RS16130 at 60.980 kb on + strand, within RALBFv3_RS16130 at 60.980 kb on + strand, within RALBFv3_RS16130 at 60.980 kb on + strand, within RALBFv3_RS16130 at 60.980 kb on + strand, within RALBFv3_RS16130 at 60.980 kb on + strand, within RALBFv3_RS16130 at 60.981 kb on - strand, within RALBFv3_RS16130 at 60.981 kb on - strand, within RALBFv3_RS16130 at 60.981 kb on - strand, within RALBFv3_RS16130 at 60.981 kb on - strand, within RALBFv3_RS16130 at 61.055 kb on + strand, within RALBFv3_RS16130 at 61.056 kb on - strand, within RALBFv3_RS16130 at 61.187 kb on + strand, within RALBFv3_RS16130 at 61.193 kb on + strand, within RALBFv3_RS16130 at 61.193 kb on + strand, within RALBFv3_RS16130 at 61.373 kb on + strand, within RALBFv3_RS16130 at 61.373 kb on + strand, within RALBFv3_RS16130 at 61.373 kb on + strand, within RALBFv3_RS16130 at 61.374 kb on - strand, within RALBFv3_RS16130 at 61.374 kb on - strand, within RALBFv3_RS16130 at 61.374 kb on - strand, within RALBFv3_RS16130 at 61.374 kb on - strand, within RALBFv3_RS16130 at 61.536 kb on + strand at 61.537 kb on - strand at 61.581 kb on - strand at 61.626 kb on + strand at 61.626 kb on + strand at 61.626 kb on + strand at 61.626 kb on + strand at 61.627 kb on - strand at 61.627 kb on - strand at 61.627 kb on - strand at 61.627 kb on - strand at 61.627 kb on - strand at 61.706 kb on + strand at 61.706 kb on + strand at 61.706 kb on + strand at 61.706 kb on + strand at 61.707 kb on - strand at 61.707 kb on - strand at 61.707 kb on - strand at 61.710 kb on + strand at 61.710 kb on + strand at 61.711 kb on - strand at 61.711 kb on - strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.809 kb on - strand at 61.913 kb on + strand, within RALBFv3_RS16135 at 61.913 kb on + strand, within RALBFv3_RS16135 at 61.913 kb on + strand, within RALBFv3_RS16135 at 61.913 kb on + strand, within RALBFv3_RS16135 at 61.913 kb on + strand, within RALBFv3_RS16135 at 61.913 kb on + strand, within RALBFv3_RS16135 at 61.914 kb on - strand, within RALBFv3_RS16135 at 62.087 kb on + strand, within RALBFv3_RS16135 at 62.402 kb on + strand, within RALBFv3_RS16135 at 62.403 kb on - strand, within RALBFv3_RS16135 at 62.462 kb on + strand, within RALBFv3_RS16135 at 62.462 kb on + strand, within RALBFv3_RS16135 at 62.462 kb on + strand, within RALBFv3_RS16135 at 62.462 kb on + strand, within RALBFv3_RS16135 at 62.463 kb on - strand, within RALBFv3_RS16135 at 62.463 kb on - strand, within RALBFv3_RS16135 at 62.463 kb on - strand, within RALBFv3_RS16135 at 62.471 kb on + strand, within RALBFv3_RS16135 at 62.472 kb on - strand, within RALBFv3_RS16135 at 62.472 kb on - strand, within RALBFv3_RS16135 at 62.472 kb on - strand, within RALBFv3_RS16135 at 62.498 kb on + strand, within RALBFv3_RS16135 at 62.498 kb on + strand, within RALBFv3_RS16135 at 62.498 kb on + strand, within RALBFv3_RS16135 at 62.499 kb on - strand, within RALBFv3_RS16135 at 62.499 kb on - strand, within RALBFv3_RS16135 at 62.499 kb on - strand, within RALBFv3_RS16135 at 62.535 kb on + strand, within RALBFv3_RS16135 at 62.613 kb on - strand, within RALBFv3_RS16135 at 62.736 kb on + strand, within RALBFv3_RS16135 at 62.736 kb on + strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.737 kb on - strand, within RALBFv3_RS16135 at 62.740 kb on + strand, within RALBFv3_RS16135 at 62.740 kb on + strand, within RALBFv3_RS16135 at 62.740 kb on + strand, within RALBFv3_RS16135 at 62.741 kb on - strand, within RALBFv3_RS16135 at 62.741 kb on - strand, within RALBFv3_RS16135 at 62.876 kb on - strand, within RALBFv3_RS16135 at 62.966 kb on + strand at 62.966 kb on + strand at 62.966 kb on + strand at 62.966 kb on + strand at 62.967 kb on - strand at 63.139 kb on - strand, within RALBFv3_RS16140 at 63.391 kb on - strand, within RALBFv3_RS16140 at 63.462 kb on + strand, within RALBFv3_RS16140 at 63.463 kb on - strand, within RALBFv3_RS16140 at 63.726 kb on + strand, within RALBFv3_RS16140 at 63.727 kb on - strand, within RALBFv3_RS16140 at 63.727 kb on - strand, within RALBFv3_RS16140 at 63.831 kb on + strand at 63.831 kb on + strand at 63.863 kb on + strand at 63.863 kb on + strand at 63.864 kb on - strand at 63.920 kb on + strand at 63.996 kb on + strand, within RALBFv3_RS16145 at 64.027 kb on - strand, within RALBFv3_RS16145 at 64.030 kb on - strand, within RALBFv3_RS16145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 60,751 + RALBFv3_RS16130 0.48 -0.6 60,751 + RALBFv3_RS16130 0.48 +0.3 60,980 + RALBFv3_RS16130 0.62 +1.2 60,980 + RALBFv3_RS16130 0.62 +0.7 60,980 + RALBFv3_RS16130 0.62 +0.2 60,980 + RALBFv3_RS16130 0.62 -0.4 60,980 + RALBFv3_RS16130 0.62 -0.5 60,981 - RALBFv3_RS16130 0.63 -0.2 60,981 - RALBFv3_RS16130 0.63 -0.3 60,981 - RALBFv3_RS16130 0.63 +0.2 60,981 - RALBFv3_RS16130 0.63 +0.0 61,055 + RALBFv3_RS16130 0.67 -0.4 61,056 - RALBFv3_RS16130 0.67 -0.3 61,187 + RALBFv3_RS16130 0.76 -2.0 61,193 + RALBFv3_RS16130 0.76 -0.8 61,193 + RALBFv3_RS16130 0.76 +2.2 61,373 + RALBFv3_RS16130 0.88 -1.0 61,373 + RALBFv3_RS16130 0.88 -0.5 61,373 + RALBFv3_RS16130 0.88 -1.5 61,374 - RALBFv3_RS16130 0.88 -0.9 61,374 - RALBFv3_RS16130 0.88 +0.5 61,374 - RALBFv3_RS16130 0.88 -1.8 61,374 - RALBFv3_RS16130 0.88 +1.8 61,536 + -0.5 61,537 - +0.6 61,581 - +0.1 61,626 + +1.3 61,626 + -0.7 61,626 + -0.1 61,626 + -0.8 61,627 - +0.5 61,627 - +0.2 61,627 - +0.7 61,627 - -1.4 61,627 - +2.5 61,706 + +0.7 61,706 + +1.4 61,706 + -1.9 61,706 + +0.3 61,707 - +0.6 61,707 - +0.3 61,707 - -0.9 61,710 + +0.1 61,710 + -0.2 61,711 - +0.2 61,711 - +1.2 61,808 + -0.2 61,808 + +1.7 61,808 + +0.1 61,808 + -0.0 61,809 - +0.1 61,913 + RALBFv3_RS16135 0.14 +0.4 61,913 + RALBFv3_RS16135 0.14 +0.2 61,913 + RALBFv3_RS16135 0.14 -0.1 61,913 + RALBFv3_RS16135 0.14 -1.2 61,913 + RALBFv3_RS16135 0.14 -1.7 61,913 + RALBFv3_RS16135 0.14 -0.9 61,914 - RALBFv3_RS16135 0.14 +0.2 62,087 + RALBFv3_RS16135 0.27 -1.3 62,402 + RALBFv3_RS16135 0.50 -0.2 62,403 - RALBFv3_RS16135 0.50 -0.7 62,462 + RALBFv3_RS16135 0.55 -0.1 62,462 + RALBFv3_RS16135 0.55 -1.5 62,462 + RALBFv3_RS16135 0.55 +0.7 62,462 + RALBFv3_RS16135 0.55 -0.3 62,463 - RALBFv3_RS16135 0.55 -1.1 62,463 - RALBFv3_RS16135 0.55 -0.9 62,463 - RALBFv3_RS16135 0.55 -0.4 62,471 + RALBFv3_RS16135 0.55 -0.4 62,472 - RALBFv3_RS16135 0.56 -1.5 62,472 - RALBFv3_RS16135 0.56 -0.6 62,472 - RALBFv3_RS16135 0.56 +0.2 62,498 + RALBFv3_RS16135 0.57 +0.9 62,498 + RALBFv3_RS16135 0.57 +0.3 62,498 + RALBFv3_RS16135 0.57 -0.3 62,499 - RALBFv3_RS16135 0.58 +0.8 62,499 - RALBFv3_RS16135 0.58 +0.2 62,499 - RALBFv3_RS16135 0.58 -0.2 62,535 + RALBFv3_RS16135 0.60 -1.1 62,613 - RALBFv3_RS16135 0.66 +0.4 62,736 + RALBFv3_RS16135 0.75 -1.5 62,736 + RALBFv3_RS16135 0.75 +0.7 62,737 - RALBFv3_RS16135 0.75 +0.8 62,737 - RALBFv3_RS16135 0.75 -0.8 62,737 - RALBFv3_RS16135 0.75 -0.8 62,737 - RALBFv3_RS16135 0.75 -0.8 62,737 - RALBFv3_RS16135 0.75 -0.5 62,737 - RALBFv3_RS16135 0.75 -0.6 62,737 - RALBFv3_RS16135 0.75 -1.0 62,737 - RALBFv3_RS16135 0.75 +2.5 62,737 - RALBFv3_RS16135 0.75 +0.3 62,737 - RALBFv3_RS16135 0.75 -1.3 62,737 - RALBFv3_RS16135 0.75 -0.1 62,740 + RALBFv3_RS16135 0.75 +0.9 62,740 + RALBFv3_RS16135 0.75 +1.4 62,740 + RALBFv3_RS16135 0.75 +0.2 62,741 - RALBFv3_RS16135 0.76 -0.2 62,741 - RALBFv3_RS16135 0.76 +0.3 62,876 - RALBFv3_RS16135 0.86 -1.3 62,966 + -0.2 62,966 + -0.1 62,966 + +1.5 62,966 + -0.2 62,967 - +0.1 63,139 - RALBFv3_RS16140 0.13 +0.6 63,391 - RALBFv3_RS16140 0.44 +0.3 63,462 + RALBFv3_RS16140 0.53 +0.9 63,463 - RALBFv3_RS16140 0.53 -0.4 63,726 + RALBFv3_RS16140 0.86 +1.3 63,727 - RALBFv3_RS16140 0.87 +0.4 63,727 - RALBFv3_RS16140 0.87 -1.1 63,831 + -2.1 63,831 + +1.2 63,863 + -0.1 63,863 + +0.2 63,864 - +0.0 63,920 + -0.2 63,996 + RALBFv3_RS16145 0.11 +1.2 64,027 - RALBFv3_RS16145 0.14 +0.0 64,030 - RALBFv3_RS16145 0.14 +0.0
Or see this region's nucleotide sequence