Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15280

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15275 and RALBFv3_RS15280 are separated by 63 nucleotidesRALBFv3_RS15280 and RALBFv3_RS15285 are separated by 36 nucleotidesRALBFv3_RS15285 and RALBFv3_RS15290 are separated by 58 nucleotides RALBFv3_RS15275: RALBFv3_RS15275 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 3,325,610 to 3,326,905 _RS15275 RALBFv3_RS15280: RALBFv3_RS15280 - histidine--tRNA ligase, at 3,326,969 to 3,328,291 _RS15280 RALBFv3_RS15285: RALBFv3_RS15285 - membrane protein, at 3,328,328 to 3,328,963 _RS15285 RALBFv3_RS15290: RALBFv3_RS15290 - outer membrane protein assembly factor BamB, at 3,329,022 to 3,330,188 _RS15290 Position (kb) 3326 3327 3328 3329Strain fitness (log2 ratio) -1 0 1 2at 3328.282 kb on + strandat 3328.316 kb on + strandat 3328.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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3,328,282 + +1.9
3,328,316 + +0.3
3,328,320 + -0.9

Or see this region's nucleotide sequence