Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS10930

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS10920 and RALBFv3_RS10925 are separated by 19 nucleotidesRALBFv3_RS10925 and RALBFv3_RS10930 are separated by 99 nucleotidesRALBFv3_RS10930 and RALBFv3_RS10935 are separated by 112 nucleotides RALBFv3_RS10920: RALBFv3_RS10920 - glycerol-3-phosphate dehydrogenase, at 2,415,842 to 2,416,858 _RS10920 RALBFv3_RS10925: RALBFv3_RS10925 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 2,416,878 to 2,417,348 _RS10925 RALBFv3_RS10930: RALBFv3_RS10930 - amidophosphoribosyltransferase, at 2,417,448 to 2,418,170 _RS10930 RALBFv3_RS10935: RALBFv3_RS10935 - SAM-dependent methyltransferase, at 2,418,283 to 2,419,224 _RS10935 Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -1 0 1at 2416.921 kb on - strandat 2418.058 kb on - strand, within RALBFv3_RS10930

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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2,416,921 - -0.2
2,418,058 - RALBFv3_RS10930 0.84 -0.6

Or see this region's nucleotide sequence