Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS05460

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS05455 and RALBFv3_RS05460 are separated by 391 nucleotidesRALBFv3_RS05460 and RALBFv3_RS05465 are separated by 67 nucleotides RALBFv3_RS05455: RALBFv3_RS05455 - metalloprotease TldD, at 1,208,628 to 1,210,088 _RS05455 RALBFv3_RS05460: RALBFv3_RS05460 - 3-deoxy-7-phosphoheptulonate synthase, at 1,210,480 to 1,211,559 _RS05460 RALBFv3_RS05465: RALBFv3_RS05465 - type II toxin-antitoxin system HipA family toxin, at 1,211,627 to 1,212,943 _RS05465 Position (kb) 1210 1211 1212Strain fitness (log2 ratio) -3 -2 -1 0 1at 1209.637 kb on - strand, within RALBFv3_RS05455at 1209.637 kb on - strand, within RALBFv3_RS05455at 1209.637 kb on - strand, within RALBFv3_RS05455at 1209.637 kb on - strand, within RALBFv3_RS05455at 1209.705 kb on + strand, within RALBFv3_RS05455at 1209.706 kb on - strand, within RALBFv3_RS05455at 1209.741 kb on + strand, within RALBFv3_RS05455at 1209.741 kb on + strand, within RALBFv3_RS05455at 1209.742 kb on - strand, within RALBFv3_RS05455at 1209.742 kb on - strand, within RALBFv3_RS05455at 1209.801 kb on + strand, within RALBFv3_RS05455at 1209.873 kb on + strand, within RALBFv3_RS05455at 1209.874 kb on - strand, within RALBFv3_RS05455at 1210.172 kb on - strandat 1210.226 kb on + strandat 1210.430 kb on - strandat 1210.812 kb on + strand, within RALBFv3_RS05460at 1210.813 kb on + strand, within RALBFv3_RS05460at 1210.813 kb on + strand, within RALBFv3_RS05460at 1210.814 kb on - strand, within RALBFv3_RS05460at 1210.910 kb on - strand, within RALBFv3_RS05460at 1210.933 kb on + strand, within RALBFv3_RS05460at 1211.169 kb on + strand, within RALBFv3_RS05460at 1211.200 kb on + strand, within RALBFv3_RS05460at 1211.824 kb on + strand, within RALBFv3_RS05465at 1211.950 kb on + strand, within RALBFv3_RS05465at 1211.950 kb on + strand, within RALBFv3_RS05465at 1211.950 kb on + strand, within RALBFv3_RS05465at 1211.950 kb on + strand, within RALBFv3_RS05465at 1211.951 kb on - strand, within RALBFv3_RS05465at 1211.951 kb on - strand, within RALBFv3_RS05465at 1211.951 kb on - strand, within RALBFv3_RS05465at 1211.952 kb on + strand, within RALBFv3_RS05465at 1212.062 kb on - strand, within RALBFv3_RS05465at 1212.097 kb on + strand, within RALBFv3_RS05465at 1212.097 kb on + strand, within RALBFv3_RS05465at 1212.097 kb on + strand, within RALBFv3_RS05465at 1212.098 kb on - strand, within RALBFv3_RS05465at 1212.098 kb on - strand, within RALBFv3_RS05465at 1212.098 kb on - strand, within RALBFv3_RS05465at 1212.098 kb on - strand, within RALBFv3_RS05465at 1212.098 kb on - strand, within RALBFv3_RS05465at 1212.171 kb on + strand, within RALBFv3_RS05465at 1212.171 kb on + strand, within RALBFv3_RS05465at 1212.172 kb on - strand, within RALBFv3_RS05465at 1212.273 kb on + strand, within RALBFv3_RS05465at 1212.273 kb on + strand, within RALBFv3_RS05465at 1212.291 kb on + strand, within RALBFv3_RS05465at 1212.311 kb on + strand, within RALBFv3_RS05465at 1212.521 kb on - strand, within RALBFv3_RS05465at 1212.547 kb on + strand, within RALBFv3_RS05465at 1212.547 kb on + strand, within RALBFv3_RS05465at 1212.548 kb on - strand, within RALBFv3_RS05465at 1212.548 kb on - strand, within RALBFv3_RS05465at 1212.548 kb on - strand, within RALBFv3_RS05465at 1212.548 kb on - strand, within RALBFv3_RS05465

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,209,637 - RALBFv3_RS05455 0.69 -1.5
1,209,637 - RALBFv3_RS05455 0.69 -0.1
1,209,637 - RALBFv3_RS05455 0.69 +1.6
1,209,637 - RALBFv3_RS05455 0.69 -0.0
1,209,705 + RALBFv3_RS05455 0.74 -1.1
1,209,706 - RALBFv3_RS05455 0.74 -1.0
1,209,741 + RALBFv3_RS05455 0.76 -0.8
1,209,741 + RALBFv3_RS05455 0.76 +0.0
1,209,742 - RALBFv3_RS05455 0.76 +0.6
1,209,742 - RALBFv3_RS05455 0.76 +0.2
1,209,801 + RALBFv3_RS05455 0.80 -0.7
1,209,873 + RALBFv3_RS05455 0.85 -3.3
1,209,874 - RALBFv3_RS05455 0.85 -1.4
1,210,172 - -1.1
1,210,226 + +0.6
1,210,430 - -2.6
1,210,812 + RALBFv3_RS05460 0.31 -0.7
1,210,813 + RALBFv3_RS05460 0.31 -1.4
1,210,813 + RALBFv3_RS05460 0.31 -0.8
1,210,814 - RALBFv3_RS05460 0.31 -1.0
1,210,910 - RALBFv3_RS05460 0.40 -1.8
1,210,933 + RALBFv3_RS05460 0.42 -2.1
1,211,169 + RALBFv3_RS05460 0.64 +0.7
1,211,200 + RALBFv3_RS05460 0.67 -1.0
1,211,824 + RALBFv3_RS05465 0.15 -0.5
1,211,950 + RALBFv3_RS05465 0.25 +0.4
1,211,950 + RALBFv3_RS05465 0.25 +0.2
1,211,950 + RALBFv3_RS05465 0.25 -2.1
1,211,950 + RALBFv3_RS05465 0.25 +0.1
1,211,951 - RALBFv3_RS05465 0.25 +0.9
1,211,951 - RALBFv3_RS05465 0.25 +0.6
1,211,951 - RALBFv3_RS05465 0.25 +0.7
1,211,952 + RALBFv3_RS05465 0.25 +0.5
1,212,062 - RALBFv3_RS05465 0.33 +0.3
1,212,097 + RALBFv3_RS05465 0.36 -0.3
1,212,097 + RALBFv3_RS05465 0.36 +0.0
1,212,097 + RALBFv3_RS05465 0.36 -0.2
1,212,098 - RALBFv3_RS05465 0.36 +0.4
1,212,098 - RALBFv3_RS05465 0.36 -0.1
1,212,098 - RALBFv3_RS05465 0.36 +1.4
1,212,098 - RALBFv3_RS05465 0.36 +0.5
1,212,098 - RALBFv3_RS05465 0.36 -1.3
1,212,171 + RALBFv3_RS05465 0.41 +0.1
1,212,171 + RALBFv3_RS05465 0.41 +1.7
1,212,172 - RALBFv3_RS05465 0.41 +0.6
1,212,273 + RALBFv3_RS05465 0.49 +0.1
1,212,273 + RALBFv3_RS05465 0.49 -0.6
1,212,291 + RALBFv3_RS05465 0.50 -0.7
1,212,311 + RALBFv3_RS05465 0.52 -1.0
1,212,521 - RALBFv3_RS05465 0.68 +1.2
1,212,547 + RALBFv3_RS05465 0.70 -0.4
1,212,547 + RALBFv3_RS05465 0.70 -0.5
1,212,548 - RALBFv3_RS05465 0.70 -0.1
1,212,548 - RALBFv3_RS05465 0.70 -0.4
1,212,548 - RALBFv3_RS05465 0.70 +0.0
1,212,548 - RALBFv3_RS05465 0.70 -0.1

Or see this region's nucleotide sequence