Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS03465

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS03460 and RALBFv3_RS03465 are separated by 55 nucleotidesRALBFv3_RS03465 and RALBFv3_RS03470 overlap by 4 nucleotidesRALBFv3_RS03470 and RALBFv3_RS03475 overlap by 1 nucleotides RALBFv3_RS03460: RALBFv3_RS03460 - BMP family ABC transporter substrate-binding protein, at 763,062 to 764,216 _RS03460 RALBFv3_RS03465: RALBFv3_RS03465 - DUF4019 domain-containing protein, at 764,272 to 764,832 _RS03465 RALBFv3_RS03470: RALBFv3_RS03470 - hypothetical protein, at 764,829 to 765,350 _RS03470 RALBFv3_RS03475: RALBFv3_RS03475 - hypothetical protein, at 765,350 to 766,459 _RS03475 Position (kb) 764 765Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 763.401 kb on + strand, within RALBFv3_RS03460at 763.525 kb on - strand, within RALBFv3_RS03460at 763.539 kb on + strand, within RALBFv3_RS03460at 763.539 kb on + strand, within RALBFv3_RS03460at 763.539 kb on + strand, within RALBFv3_RS03460at 763.539 kb on + strand, within RALBFv3_RS03460at 763.540 kb on - strand, within RALBFv3_RS03460at 763.540 kb on - strand, within RALBFv3_RS03460at 763.551 kb on + strand, within RALBFv3_RS03460at 763.640 kb on + strand, within RALBFv3_RS03460at 763.641 kb on - strand, within RALBFv3_RS03460at 763.833 kb on + strand, within RALBFv3_RS03460at 763.834 kb on - strand, within RALBFv3_RS03460at 763.914 kb on + strand, within RALBFv3_RS03460at 763.914 kb on + strand, within RALBFv3_RS03460at 763.914 kb on + strand, within RALBFv3_RS03460at 763.915 kb on - strand, within RALBFv3_RS03460at 763.917 kb on + strand, within RALBFv3_RS03460at 763.917 kb on + strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 763.918 kb on - strand, within RALBFv3_RS03460at 764.276 kb on + strandat 764.277 kb on - strandat 764.282 kb on + strandat 764.283 kb on - strandat 764.283 kb on - strandat 764.303 kb on + strandat 764.303 kb on + strandat 764.303 kb on + strandat 764.304 kb on - strandat 764.304 kb on - strandat 764.307 kb on - strandat 764.307 kb on - strandat 764.307 kb on - strandat 764.373 kb on - strand, within RALBFv3_RS03465at 764.373 kb on - strand, within RALBFv3_RS03465at 764.423 kb on + strand, within RALBFv3_RS03465at 764.424 kb on - strand, within RALBFv3_RS03465at 764.553 kb on - strand, within RALBFv3_RS03465at 764.585 kb on + strand, within RALBFv3_RS03465at 764.600 kb on + strand, within RALBFv3_RS03465at 764.601 kb on - strand, within RALBFv3_RS03465at 765.095 kb on - strand, within RALBFv3_RS03470at 765.095 kb on - strand, within RALBFv3_RS03470at 765.565 kb on - strand, within RALBFv3_RS03475at 765.712 kb on + strand, within RALBFv3_RS03475at 765.713 kb on - strand, within RALBFv3_RS03475at 765.713 kb on - strand, within RALBFv3_RS03475at 765.713 kb on - strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.813 kb on + strand, within RALBFv3_RS03475at 765.814 kb on - strand, within RALBFv3_RS03475at 765.814 kb on - strand, within RALBFv3_RS03475

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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763,401 + RALBFv3_RS03460 0.29 -0.5
763,525 - RALBFv3_RS03460 0.40 +0.3
763,539 + RALBFv3_RS03460 0.41 +0.1
763,539 + RALBFv3_RS03460 0.41 -0.2
763,539 + RALBFv3_RS03460 0.41 -0.9
763,539 + RALBFv3_RS03460 0.41 +0.3
763,540 - RALBFv3_RS03460 0.41 +0.8
763,540 - RALBFv3_RS03460 0.41 +1.0
763,551 + RALBFv3_RS03460 0.42 +0.4
763,640 + RALBFv3_RS03460 0.50 +1.1
763,641 - RALBFv3_RS03460 0.50 +0.3
763,833 + RALBFv3_RS03460 0.67 -1.4
763,834 - RALBFv3_RS03460 0.67 +1.7
763,914 + RALBFv3_RS03460 0.74 -0.4
763,914 + RALBFv3_RS03460 0.74 +0.1
763,914 + RALBFv3_RS03460 0.74 +0.1
763,915 - RALBFv3_RS03460 0.74 +0.2
763,917 + RALBFv3_RS03460 0.74 +0.1
763,917 + RALBFv3_RS03460 0.74 -0.7
763,918 - RALBFv3_RS03460 0.74 -1.0
763,918 - RALBFv3_RS03460 0.74 +0.3
763,918 - RALBFv3_RS03460 0.74 +1.3
763,918 - RALBFv3_RS03460 0.74 -0.9
764,276 + -0.2
764,277 - -0.2
764,282 + +0.7
764,283 - -0.3
764,283 - +1.3
764,303 + +0.4
764,303 + +0.2
764,303 + -0.1
764,304 - +0.3
764,304 - +0.2
764,307 - +1.4
764,307 - +0.2
764,307 - +0.4
764,373 - RALBFv3_RS03465 0.18 -0.1
764,373 - RALBFv3_RS03465 0.18 +0.0
764,423 + RALBFv3_RS03465 0.27 +1.1
764,424 - RALBFv3_RS03465 0.27 -0.1
764,553 - RALBFv3_RS03465 0.50 +0.3
764,585 + RALBFv3_RS03465 0.56 -0.2
764,600 + RALBFv3_RS03465 0.58 +0.1
764,601 - RALBFv3_RS03465 0.59 +1.0
765,095 - RALBFv3_RS03470 0.51 -1.5
765,095 - RALBFv3_RS03470 0.51 -3.9
765,565 - RALBFv3_RS03475 0.19 +0.4
765,712 + RALBFv3_RS03475 0.33 +0.3
765,713 - RALBFv3_RS03475 0.33 +0.3
765,713 - RALBFv3_RS03475 0.33 -0.1
765,713 - RALBFv3_RS03475 0.33 -0.7
765,813 + RALBFv3_RS03475 0.42 -0.1
765,813 + RALBFv3_RS03475 0.42 -1.0
765,813 + RALBFv3_RS03475 0.42 +0.2
765,813 + RALBFv3_RS03475 0.42 +0.4
765,813 + RALBFv3_RS03475 0.42 +0.9
765,813 + RALBFv3_RS03475 0.42 -0.3
765,814 - RALBFv3_RS03475 0.42 +0.1
765,814 - RALBFv3_RS03475 0.42 +0.2

Or see this region's nucleotide sequence