Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02125 and RALBFv3_RS02130 are separated by 23 nucleotides RALBFv3_RS02130 and RALBFv3_RS02135 are separated by 30 nucleotides RALBFv3_RS02135 and RALBFv3_RS02140 are separated by 2 nucleotides RALBFv3_RS02140 and RALBFv3_RS02145 are separated by 38 nucleotides
RALBFv3_RS02125: RALBFv3_RS02125 - phosphate regulon transcriptional regulatory protein PhoB, at 475,328 to 476,041
_RS02125
RALBFv3_RS02130: RALBFv3_RS02130 - phosphate transport system regulatory protein PhoU, at 476,065 to 476,772
_RS02130
RALBFv3_RS02135: RALBFv3_RS02135 - phosphate ABC transporter ATP-binding protein PstB, at 476,803 to 477,588
_RS02135
RALBFv3_RS02140: RALBFv3_RS02140 - phosphate transporter permease subunit PtsA, at 477,591 to 478,475
_RS02140
RALBFv3_RS02145: RALBFv3_RS02145 - phosphate transporter permease subunit PstC, at 478,514 to 479,479
_RS02145
Position (kb) 476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 475.944 kb on + strand, within RALBFv3_RS02125 at 476.136 kb on - strand, within RALBFv3_RS02130 at 476.246 kb on + strand, within RALBFv3_RS02130 at 476.247 kb on - strand, within RALBFv3_RS02130 at 476.406 kb on - strand, within RALBFv3_RS02130 at 476.825 kb on + strand at 476.900 kb on + strand, within RALBFv3_RS02135 at 476.901 kb on - strand, within RALBFv3_RS02135 at 476.906 kb on + strand, within RALBFv3_RS02135 at 476.915 kb on + strand, within RALBFv3_RS02135 at 476.969 kb on + strand, within RALBFv3_RS02135 at 477.254 kb on + strand, within RALBFv3_RS02135 at 477.398 kb on + strand, within RALBFv3_RS02135 at 477.398 kb on + strand, within RALBFv3_RS02135 at 477.398 kb on + strand, within RALBFv3_RS02135 at 477.399 kb on - strand, within RALBFv3_RS02135 at 477.518 kb on + strand at 478.153 kb on + strand, within RALBFv3_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 475,944 + RALBFv3_RS02125 0.86 -0.3 476,136 - RALBFv3_RS02130 0.10 +2.8 476,246 + RALBFv3_RS02130 0.26 +1.8 476,247 - RALBFv3_RS02130 0.26 +1.0 476,406 - RALBFv3_RS02130 0.48 +0.4 476,825 + +0.3 476,900 + RALBFv3_RS02135 0.12 +0.1 476,901 - RALBFv3_RS02135 0.12 -0.1 476,906 + RALBFv3_RS02135 0.13 -2.5 476,915 + RALBFv3_RS02135 0.14 +1.7 476,969 + RALBFv3_RS02135 0.21 -1.2 477,254 + RALBFv3_RS02135 0.57 -0.1 477,398 + RALBFv3_RS02135 0.76 -0.6 477,398 + RALBFv3_RS02135 0.76 +1.9 477,398 + RALBFv3_RS02135 0.76 -1.5 477,399 - RALBFv3_RS02135 0.76 -0.3 477,518 + -2.9 478,153 + RALBFv3_RS02140 0.64 -0.2
Or see this region's nucleotide sequence