Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12150

Experiment: Growth at 25C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at 25C
2,694,533	-		PFLU_RS12140	0.45	+2.4
2,694,539	+		PFLU_RS12140	0.47	-0.2
2,694,540	-		PFLU_RS12140	0.47	+0.1
2,694,540	-		PFLU_RS12140	0.47	-1.2
2,694,540	-		PFLU_RS12140	0.47	-2.1
2,694,546	+		PFLU_RS12140	0.49	-0.6
2,694,546	+		PFLU_RS12140	0.49	-0.5
2,694,546	+		PFLU_RS12140	0.49	+2.0
2,694,546	+		PFLU_RS12140	0.49	+3.2
2,694,546	+		PFLU_RS12140	0.49	-1.2
2,694,546	+		PFLU_RS12140	0.49	-1.2
2,694,546	+		PFLU_RS12140	0.49	+2.6
2,694,546	+		PFLU_RS12140	0.49	+1.1
2,694,546	+		PFLU_RS12140	0.49	-1.9
2,694,547	-		PFLU_RS12140	0.49	-0.9
2,694,547	-		PFLU_RS12140	0.49	+3.0
2,694,547	-		PFLU_RS12140	0.49	+2.0
2,694,547	-		PFLU_RS12140	0.49	+2.8
2,694,547	-		PFLU_RS12140	0.49	+2.7
2,694,547	-		PFLU_RS12140	0.49	+0.2
2,694,547	-		PFLU_RS12140	0.49	-2.3
2,694,663	+		PFLU_RS12140	0.83	-0.9
2,694,716	-				+0.4
2,694,741	+				+0.7
2,694,741	+				+1.4
2,694,741	+				+0.7
2,694,742	-				-1.6
2,694,765	+				-2.1
2,694,765	+				+1.3
2,694,766	-				+2.1
2,694,767	+				-1.2
2,694,767	+				-0.2
2,694,767	+				+0.8
2,694,767	+				-0.6
2,694,767	+				-1.6
2,694,767	+				+0.3
2,694,767	+				-1.2
2,694,767	+				-2.2
2,694,767	+				-3.2
2,694,767	+				-2.4
2,694,767	+				-1.4
2,694,768	-				-1.9
2,694,768	-				-1.4
2,694,768	-				+0.6
2,694,768	-				+1.2
2,694,768	-				-1.8
2,694,768	-				-2.3
2,694,768	-				-0.6
2,694,768	-				-2.6
2,694,768	-				-0.4
2,694,768	-				-0.9
2,694,768	-				+0.9
2,694,771	+				+1.6
2,694,771	+				+3.0
2,694,771	+				-0.6
2,694,771	+				+2.6
2,694,771	+				-1.6
2,694,771	+				-0.1
2,694,771	+				-1.4
2,694,772	-				+0.9
2,694,772	-				+0.8
2,694,772	-				-2.7
2,694,772	-				+1.4
2,694,772	-				+1.7
2,694,772	-				-1.4
2,694,772	-				-2.5
2,694,772	-				+0.1
2,694,772	-				-2.9
2,694,772	-				-3.3
2,694,791	-				+1.9
2,694,791	-				+0.7
2,694,791	-				-1.8
2,694,803	+				+1.2
2,694,845	+				+1.3
2,694,846	-				-0.6
2,694,853	+				+0.6
2,694,853	+				+1.2
2,694,853	+				-0.1
2,694,853	+				+2.0
2,694,853	+				+1.5
2,694,854	-				-3.0
2,694,854	-				-2.3
2,694,854	-				+0.9
2,694,858	+				-3.1
2,694,859	-				+1.8
2,694,859	-				+0.4
2,694,867	+				-1.2
2,694,867	+				+1.4
2,694,867	+				+1.2
2,694,867	+				-1.9
2,694,867	+				+0.6
2,694,867	+				+2.4
2,694,867	+				-2.1
2,694,868	-				+0.8
2,694,868	-				-2.3
2,694,868	-				-1.6
2,694,891	+				-0.6
2,694,891	+				-1.6
2,694,891	+				+1.4
2,694,891	+				-1.9
2,694,891	+				+1.6
2,694,891	+				-0.5
2,694,891	+				-2.1
2,694,891	+				+2.0
2,694,891	+				+3.6
2,694,891	+				+1.3
2,694,891	+				+1.4
2,694,891	+				+0.8
2,694,892	-				-0.9
2,694,892	-				+1.4
2,694,892	-				+0.7
2,694,892	-				-2.2
2,694,892	-				-1.9
2,694,904	+				+2.0
2,694,904	+				-0.2
2,694,904	+				+0.8
2,694,904	+				+1.3
2,694,904	+				-1.6
2,694,905	-				-0.2
2,694,905	-				-1.9
2,694,905	-				+2.0
2,694,905	-				+3.5
2,694,905	-				-1.9
2,694,905	-				-0.0
2,694,905	-				-0.8
2,694,905	-				-2.3
2,694,959	+		PFLU_RS12145	0.16	-1.4
2,694,959	+		PFLU_RS12145	0.16	-0.3
2,694,959	+		PFLU_RS12145	0.16	-1.8
2,694,994	-		PFLU_RS12145	0.30	+0.5
2,695,153	+				-1.2
2,695,153	+				-1.8
2,695,153	+				-2.3
2,695,153	+				+0.4
2,695,153	+				+1.0
2,695,153	+				+1.4
2,695,153	+				+0.4
2,695,153	+				-0.3
2,695,153	+				+2.6
2,695,153	+				-0.2
2,695,153	+				+2.6
2,695,153	+				+0.5
2,695,153	+				-0.2
2,695,153	+				+1.0
2,695,153	+				+1.8
2,695,153	+				+3.6
2,695,153	+				-1.6
2,695,154	-				-1.9
2,695,154	-				-0.2
2,695,154	-				+1.2
2,695,154	-				-2.5
2,695,154	-				-1.2
2,695,154	-				-0.9
2,695,154	-				+2.2
2,695,154	-				+0.4
2,695,154	-				-0.9
2,695,154	-				-2.3
2,695,154	-				+1.7
2,695,154	-				-0.6
2,695,154	-				-1.8
2,695,154	-				-0.2
2,695,154	-				+1.6
2,695,157	+				-2.4
2,695,157	+				-1.6
2,695,157	+				+1.7
2,695,157	+				-1.8
2,695,158	-				-1.2
2,695,158	-				-1.8
2,695,158	-				-1.4
2,695,158	-				-1.8
2,695,158	-				+0.3
2,695,175	-				-2.1
2,695,250	+				+1.0
2,695,250	+				-2.3
2,695,265	+				-0.1
2,695,265	+				+2.2
2,695,265	+				-2.6
2,695,266	-				-2.6
2,695,266	-				+3.4
2,695,266	-				+0.1
2,695,305	+				-2.8
2,695,305	+				+2.1
2,695,305	+				+1.7
2,695,306	-				-2.6
2,695,306	-				-0.2
2,695,306	-				+0.6
2,695,306	-				+2.6
2,695,306	-				-1.2
2,695,306	-				-0.9
2,695,306	-				-0.2
2,695,310	-				-2.1
2,695,310	-				-0.2
2,695,351	-				+3.2
2,695,355	+				+3.1
2,695,355	+				+2.8
2,695,356	-				-0.6
2,695,356	-				-0.2
2,695,378	-				+2.8
2,695,378	-				+3.1
2,695,400	+				-0.0
2,695,400	+				-1.6
2,695,400	+				-1.4
2,695,401	-				-2.2
2,695,401	-				-0.9
2,695,424	-				-1.1
2,695,481	+				+1.4
2,695,482	-				+2.6
2,695,491	-				-2.9
2,695,579	-				-2.8
2,695,620	-		PFLU_RS12150	0.14	-1.0
2,695,620	-		PFLU_RS12150	0.14	-2.0
2,695,667	+		PFLU_RS12150	0.19	-0.2
2,695,667	+		PFLU_RS12150	0.19	+1.3
2,695,667	+		PFLU_RS12150	0.19	-1.2
2,695,668	-		PFLU_RS12150	0.19	-0.2
2,695,668	-		PFLU_RS12150	0.19	-2.0
2,695,686	+		PFLU_RS12150	0.21	-1.2
2,695,686	+		PFLU_RS12150	0.21	-1.0
2,695,687	-		PFLU_RS12150	0.21	-0.3
2,695,687	-		PFLU_RS12150	0.21	-2.6
2,695,687	-		PFLU_RS12150	0.21	-0.4
2,695,687	-		PFLU_RS12150	0.21	+0.1
2,695,708	+		PFLU_RS12150	0.23	+0.2
2,695,739	+		PFLU_RS12150	0.26	-2.3
2,695,739	+		PFLU_RS12150	0.26	-2.2
2,695,749	+		PFLU_RS12150	0.27	-1.8
2,695,749	+		PFLU_RS12150	0.27	-2.0
2,695,750	-		PFLU_RS12150	0.28	-2.5
2,695,750	-		PFLU_RS12150	0.28	+1.7
2,695,750	-		PFLU_RS12150	0.28	-1.8
2,695,750	-		PFLU_RS12150	0.28	-2.9
2,695,750	-		PFLU_RS12150	0.28	-0.6
2,695,763	+		PFLU_RS12150	0.29	-1.2
2,695,764	-		PFLU_RS12150	0.29	+0.5
2,695,764	-		PFLU_RS12150	0.29	+0.3
2,695,867	+		PFLU_RS12150	0.40	-2.3
2,695,867	+		PFLU_RS12150	0.40	-3.0
2,695,868	-		PFLU_RS12150	0.40	+1.0
2,695,921	+		PFLU_RS12150	0.46	+1.2
2,695,938	+		PFLU_RS12150	0.47	+1.5
2,695,993	+		PFLU_RS12150	0.53	+1.2
2,695,993	+		PFLU_RS12150	0.53	+1.7
2,695,993	+		PFLU_RS12150	0.53	-0.0
2,695,994	-		PFLU_RS12150	0.53	-1.0
2,695,994	-		PFLU_RS12150	0.53	-1.6
2,695,994	-		PFLU_RS12150	0.53	-2.8
2,696,041	+		PFLU_RS12150	0.58	-3.0
2,696,041	+		PFLU_RS12150	0.58	+0.4
2,696,156	-		PFLU_RS12150	0.70	+1.0
2,696,156	-		PFLU_RS12150	0.70	-2.0
2,696,158	+		PFLU_RS12150	0.71	-1.4
2,696,158	+		PFLU_RS12150	0.71	-1.2
2,696,158	+		PFLU_RS12150	0.71	+0.8
2,696,158	+		PFLU_RS12150	0.71	-2.0
2,696,158	+		PFLU_RS12150	0.71	+1.9
2,696,159	-		PFLU_RS12150	0.71	+0.9
2,696,159	-		PFLU_RS12150	0.71	+2.4
2,696,206	-		PFLU_RS12150	0.76	-1.2
2,696,392	+				+3.4
2,696,393	-				-1.8
2,696,462	+				-2.3
2,696,462	+				-1.0
2,696,462	+				-1.8
2,696,463	-				+2.8
2,696,463	-				-1.2
2,696,463	-				-2.5
2,696,463	-				+0.8
2,696,463	-				-0.4
2,696,463	-				-2.1
2,696,463	-				-0.6
2,696,487	+				-3.0
2,696,500	+				-1.0
2,696,500	+				-2.4
2,696,519	+				+1.5
2,696,631	+		PFLU_RS12155	0.21	+1.0
2,696,632	-		PFLU_RS12155	0.22	-0.2
2,696,632	-		PFLU_RS12155	0.22	-0.1
2,696,645	+		PFLU_RS12155	0.24	-0.2
2,696,645	+		PFLU_RS12155	0.24	-1.2
2,696,646	-		PFLU_RS12155	0.25	-0.6
2,696,649	+		PFLU_RS12155	0.25	+1.1
2,696,649	+		PFLU_RS12155	0.25	-0.1
2,696,649	+		PFLU_RS12155	0.25	-2.1
2,696,650	-		PFLU_RS12155	0.25	-1.8
2,696,650	-		PFLU_RS12155	0.25	-0.0
2,696,650	-		PFLU_RS12155	0.25	-3.3
2,696,650	-		PFLU_RS12155	0.25	+3.0
2,696,650	-		PFLU_RS12155	0.25	+1.4
2,696,696	+		PFLU_RS12155	0.36	-2.1
2,696,697	-		PFLU_RS12155	0.36	+1.6
2,696,813	-		PFLU_RS12155	0.61	+1.6
2,696,813	-		PFLU_RS12155	0.61	-0.3
2,696,859	+		PFLU_RS12155	0.71	+1.4
2,696,860	-		PFLU_RS12155	0.71	+0.4
2,696,860	-		PFLU_RS12155	0.71	-1.4
2,696,860	-		PFLU_RS12155	0.71	-3.3
2,696,860	-		PFLU_RS12155	0.71	+0.4
2,696,951	+				+1.8
2,696,952	-				+1.6
2,696,952	-				-0.6
2,696,952	-				-0.2
2,696,952	-				+2.7
2,696,969	+				-0.2
2,696,969	+				+1.1
2,696,969	+				+1.7
2,696,970	-				-2.6
2,696,970	-				-1.0
2,696,995	+				-1.6
2,696,995	+				+1.0
2,696,995	+				+2.2
2,696,996	-				-2.4
2,696,996	-				+2.4
2,696,996	-				-1.4
2,696,996	-				-1.2
2,697,003	-				+0.7
2,697,003	-				-1.0
2,697,011	-				+1.9
2,697,039	+				+0.7
2,697,039	+				-2.6
2,697,039	+				+0.9
2,697,039	+				-2.6
2,697,039	+				+1.1
2,697,039	+				+0.4
2,697,039	+				-1.6
2,697,040	-				+0.5
2,697,040	-				-2.0
2,697,084	+				-0.3
2,697,084	+				-0.6
2,697,084	+				-1.8
2,697,084	+				+1.2
2,697,084	+				-0.2
2,697,085	-				+1.2
2,697,085	-				+1.0
2,697,085	-				+0.0
2,697,085	-				+0.6
2,697,085	-				-2.1
2,697,147	-				+0.4
2,697,147	-				-2.6
2,697,227	+		PFLU_RS12160	0.14	-1.0
2,697,227	+		PFLU_RS12160	0.14	-0.4
2,697,275	-		PFLU_RS12160	0.17	-2.4
2,697,356	+		PFLU_RS12160	0.23	+2.4
2,697,356	+		PFLU_RS12160	0.23	-1.0
2,697,411	+		PFLU_RS12160	0.26	+1.7
2,697,411	+		PFLU_RS12160	0.26	-0.6