Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11195

Experiment: Growth at 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS11190 and PFLU_RS11195 are separated by 40 nucleotidesPFLU_RS11195 and PFLU_RS11200 are separated by 45 nucleotides PFLU_RS11190: PFLU_RS11190 - ABC transporter substrate-binding protein, at 2,473,441 to 2,475,051 _RS11190 PFLU_RS11195: PFLU_RS11195 - ABC transporter permease, at 2,475,092 to 2,476,129 _RS11195 PFLU_RS11200: PFLU_RS11200 - ABC transporter substrate-binding protein, at 2,476,175 to 2,477,785 _RS11200 Position (kb) 2475 2476 2477Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2474.277 kb on - strand, within PFLU_RS11190at 2474.277 kb on - strand, within PFLU_RS11190at 2474.308 kb on + strand, within PFLU_RS11190at 2474.308 kb on + strand, within PFLU_RS11190at 2474.308 kb on + strand, within PFLU_RS11190at 2474.308 kb on + strand, within PFLU_RS11190at 2474.308 kb on + strand, within PFLU_RS11190at 2474.308 kb on + strand, within PFLU_RS11190at 2474.308 kb on + strand, within PFLU_RS11190at 2474.309 kb on - strand, within PFLU_RS11190at 2474.309 kb on - strand, within PFLU_RS11190at 2474.309 kb on - strand, within PFLU_RS11190at 2474.309 kb on - strand, within PFLU_RS11190at 2474.311 kb on + strand, within PFLU_RS11190at 2474.312 kb on - strand, within PFLU_RS11190at 2474.312 kb on - strand, within PFLU_RS11190at 2474.312 kb on - strand, within PFLU_RS11190at 2474.312 kb on - strand, within PFLU_RS11190at 2474.419 kb on + strand, within PFLU_RS11190at 2474.419 kb on + strand, within PFLU_RS11190at 2474.665 kb on + strand, within PFLU_RS11190at 2474.665 kb on + strand, within PFLU_RS11190at 2474.665 kb on + strand, within PFLU_RS11190at 2474.751 kb on + strand, within PFLU_RS11190at 2474.752 kb on - strand, within PFLU_RS11190at 2474.752 kb on - strand, within PFLU_RS11190at 2474.761 kb on + strand, within PFLU_RS11190at 2474.761 kb on + strand, within PFLU_RS11190at 2474.761 kb on + strand, within PFLU_RS11190at 2474.761 kb on + strand, within PFLU_RS11190at 2474.762 kb on - strand, within PFLU_RS11190at 2474.762 kb on - strand, within PFLU_RS11190at 2474.824 kb on + strand, within PFLU_RS11190at 2474.824 kb on + strand, within PFLU_RS11190at 2474.824 kb on + strand, within PFLU_RS11190at 2474.825 kb on - strand, within PFLU_RS11190at 2475.037 kb on + strandat 2475.037 kb on + strandat 2475.037 kb on + strandat 2475.038 kb on - strandat 2475.100 kb on + strandat 2475.101 kb on - strandat 2475.266 kb on + strand, within PFLU_RS11195at 2475.266 kb on + strand, within PFLU_RS11195at 2475.266 kb on + strand, within PFLU_RS11195at 2475.267 kb on - strand, within PFLU_RS11195at 2475.267 kb on - strand, within PFLU_RS11195at 2475.298 kb on + strand, within PFLU_RS11195at 2475.299 kb on - strand, within PFLU_RS11195at 2475.299 kb on - strand, within PFLU_RS11195at 2475.326 kb on + strand, within PFLU_RS11195at 2475.327 kb on - strand, within PFLU_RS11195at 2475.327 kb on - strand, within PFLU_RS11195at 2475.350 kb on - strand, within PFLU_RS11195at 2475.590 kb on + strand, within PFLU_RS11195at 2475.591 kb on - strand, within PFLU_RS11195at 2475.591 kb on - strand, within PFLU_RS11195at 2475.591 kb on - strand, within PFLU_RS11195at 2475.731 kb on - strand, within PFLU_RS11195at 2475.773 kb on + strand, within PFLU_RS11195at 2475.774 kb on - strand, within PFLU_RS11195at 2475.774 kb on - strand, within PFLU_RS11195at 2475.774 kb on - strand, within PFLU_RS11195at 2475.774 kb on - strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.824 kb on + strand, within PFLU_RS11195at 2475.825 kb on - strand, within PFLU_RS11195at 2475.825 kb on - strand, within PFLU_RS11195at 2475.825 kb on - strand, within PFLU_RS11195at 2475.996 kb on - strand, within PFLU_RS11195at 2475.996 kb on - strand, within PFLU_RS11195at 2475.996 kb on - strand, within PFLU_RS11195at 2475.996 kb on - strand, within PFLU_RS11195at 2475.996 kb on - strand, within PFLU_RS11195at 2476.007 kb on - strand, within PFLU_RS11195at 2476.100 kb on + strandat 2476.100 kb on + strandat 2476.100 kb on + strandat 2476.101 kb on - strandat 2476.101 kb on - strandat 2476.101 kb on - strandat 2476.147 kb on + strandat 2476.147 kb on + strandat 2476.154 kb on - strandat 2476.155 kb on + strandat 2476.156 kb on - strandat 2476.365 kb on - strand, within PFLU_RS11200at 2476.583 kb on + strand, within PFLU_RS11200at 2476.603 kb on + strand, within PFLU_RS11200at 2476.604 kb on - strand, within PFLU_RS11200at 2476.604 kb on - strand, within PFLU_RS11200at 2476.604 kb on - strand, within PFLU_RS11200at 2476.906 kb on + strand, within PFLU_RS11200at 2476.906 kb on + strand, within PFLU_RS11200at 2476.907 kb on - strand, within PFLU_RS11200at 2476.907 kb on - strand, within PFLU_RS11200at 2476.907 kb on - strand, within PFLU_RS11200at 2476.964 kb on + strand, within PFLU_RS11200at 2477.045 kb on + strand, within PFLU_RS11200at 2477.045 kb on + strand, within PFLU_RS11200at 2477.045 kb on + strand, within PFLU_RS11200at 2477.045 kb on + strand, within PFLU_RS11200at 2477.045 kb on + strand, within PFLU_RS11200at 2477.045 kb on + strand, within PFLU_RS11200at 2477.045 kb on + strand, within PFLU_RS11200at 2477.046 kb on - strand, within PFLU_RS11200at 2477.046 kb on - strand, within PFLU_RS11200at 2477.046 kb on - strand, within PFLU_RS11200at 2477.046 kb on - strand, within PFLU_RS11200at 2477.046 kb on - strand, within PFLU_RS11200at 2477.046 kb on - strand, within PFLU_RS11200at 2477.046 kb on - strand, within PFLU_RS11200at 2477.048 kb on + strand, within PFLU_RS11200at 2477.048 kb on + strand, within PFLU_RS11200at 2477.048 kb on + strand, within PFLU_RS11200at 2477.049 kb on - strand, within PFLU_RS11200at 2477.049 kb on - strand, within PFLU_RS11200at 2477.049 kb on - strand, within PFLU_RS11200at 2477.049 kb on - strand, within PFLU_RS11200at 2477.049 kb on - strand, within PFLU_RS11200at 2477.049 kb on - strand, within PFLU_RS11200at 2477.123 kb on + strand, within PFLU_RS11200at 2477.123 kb on + strand, within PFLU_RS11200at 2477.123 kb on + strand, within PFLU_RS11200at 2477.124 kb on - strand, within PFLU_RS11200at 2477.124 kb on - strand, within PFLU_RS11200at 2477.124 kb on - strand, within PFLU_RS11200

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at 25C
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2,474,277 - PFLU_RS11190 0.52 -0.0
2,474,277 - PFLU_RS11190 0.52 +2.0
2,474,308 + PFLU_RS11190 0.54 -1.0
2,474,308 + PFLU_RS11190 0.54 +1.2
2,474,308 + PFLU_RS11190 0.54 +0.6
2,474,308 + PFLU_RS11190 0.54 -0.4
2,474,308 + PFLU_RS11190 0.54 -0.4
2,474,308 + PFLU_RS11190 0.54 -1.6
2,474,308 + PFLU_RS11190 0.54 -0.0
2,474,309 - PFLU_RS11190 0.54 +2.1
2,474,309 - PFLU_RS11190 0.54 +1.8
2,474,309 - PFLU_RS11190 0.54 -1.8
2,474,309 - PFLU_RS11190 0.54 +0.8
2,474,311 + PFLU_RS11190 0.54 +2.1
2,474,312 - PFLU_RS11190 0.54 -0.8
2,474,312 - PFLU_RS11190 0.54 -0.6
2,474,312 - PFLU_RS11190 0.54 +0.8
2,474,312 - PFLU_RS11190 0.54 -1.4
2,474,419 + PFLU_RS11190 0.61 -0.0
2,474,419 + PFLU_RS11190 0.61 +2.5
2,474,665 + PFLU_RS11190 0.76 -2.7
2,474,665 + PFLU_RS11190 0.76 -2.1
2,474,665 + PFLU_RS11190 0.76 +0.8
2,474,751 + PFLU_RS11190 0.81 -2.7
2,474,752 - PFLU_RS11190 0.81 -0.6
2,474,752 - PFLU_RS11190 0.81 -1.0
2,474,761 + PFLU_RS11190 0.82 +0.6
2,474,761 + PFLU_RS11190 0.82 +1.7
2,474,761 + PFLU_RS11190 0.82 -0.4
2,474,761 + PFLU_RS11190 0.82 -2.6
2,474,762 - PFLU_RS11190 0.82 +0.3
2,474,762 - PFLU_RS11190 0.82 +1.7
2,474,824 + PFLU_RS11190 0.86 -2.3
2,474,824 + PFLU_RS11190 0.86 +2.0
2,474,824 + PFLU_RS11190 0.86 -1.2
2,474,825 - PFLU_RS11190 0.86 -1.4
2,475,037 + -2.5
2,475,037 + -1.2
2,475,037 + +2.1
2,475,038 - -1.6
2,475,100 + -3.1
2,475,101 - +0.9
2,475,266 + PFLU_RS11195 0.17 -2.1
2,475,266 + PFLU_RS11195 0.17 -0.6
2,475,266 + PFLU_RS11195 0.17 -2.0
2,475,267 - PFLU_RS11195 0.17 -1.0
2,475,267 - PFLU_RS11195 0.17 -1.8
2,475,298 + PFLU_RS11195 0.20 -0.8
2,475,299 - PFLU_RS11195 0.20 +0.9
2,475,299 - PFLU_RS11195 0.20 +0.6
2,475,326 + PFLU_RS11195 0.23 +1.0
2,475,327 - PFLU_RS11195 0.23 +2.3
2,475,327 - PFLU_RS11195 0.23 -1.0
2,475,350 - PFLU_RS11195 0.25 +3.3
2,475,590 + PFLU_RS11195 0.48 -1.6
2,475,591 - PFLU_RS11195 0.48 +1.0
2,475,591 - PFLU_RS11195 0.48 -1.9
2,475,591 - PFLU_RS11195 0.48 -2.4
2,475,731 - PFLU_RS11195 0.62 +0.1
2,475,773 + PFLU_RS11195 0.66 -1.2
2,475,774 - PFLU_RS11195 0.66 -2.2
2,475,774 - PFLU_RS11195 0.66 +2.4
2,475,774 - PFLU_RS11195 0.66 +2.2
2,475,774 - PFLU_RS11195 0.66 -1.0
2,475,824 + PFLU_RS11195 0.71 -3.8
2,475,824 + PFLU_RS11195 0.71 -0.8
2,475,824 + PFLU_RS11195 0.71 -2.5
2,475,824 + PFLU_RS11195 0.71 +1.0
2,475,824 + PFLU_RS11195 0.71 -0.8
2,475,824 + PFLU_RS11195 0.71 +2.9
2,475,824 + PFLU_RS11195 0.71 -0.4
2,475,824 + PFLU_RS11195 0.71 +0.5
2,475,824 + PFLU_RS11195 0.71 -2.0
2,475,825 - PFLU_RS11195 0.71 +0.9
2,475,825 - PFLU_RS11195 0.71 +2.1
2,475,825 - PFLU_RS11195 0.71 +1.0
2,475,996 - PFLU_RS11195 0.87 +1.9
2,475,996 - PFLU_RS11195 0.87 +2.1
2,475,996 - PFLU_RS11195 0.87 -2.1
2,475,996 - PFLU_RS11195 0.87 -0.0
2,475,996 - PFLU_RS11195 0.87 +0.2
2,476,007 - PFLU_RS11195 0.88 -0.4
2,476,100 + +3.4
2,476,100 + +2.3
2,476,100 + -0.4
2,476,101 - -2.2
2,476,101 - -0.1
2,476,101 - +1.2
2,476,147 + +0.3
2,476,147 + -1.6
2,476,154 - -1.6
2,476,155 + -1.0
2,476,156 - -0.0
2,476,365 - PFLU_RS11200 0.12 +0.8
2,476,583 + PFLU_RS11200 0.25 -0.5
2,476,603 + PFLU_RS11200 0.27 -2.1
2,476,604 - PFLU_RS11200 0.27 -1.4
2,476,604 - PFLU_RS11200 0.27 -1.0
2,476,604 - PFLU_RS11200 0.27 -3.1
2,476,906 + PFLU_RS11200 0.45 +0.3
2,476,906 + PFLU_RS11200 0.45 -1.6
2,476,907 - PFLU_RS11200 0.45 -0.0
2,476,907 - PFLU_RS11200 0.45 -0.0
2,476,907 - PFLU_RS11200 0.45 -2.0
2,476,964 + PFLU_RS11200 0.49 -2.6
2,477,045 + PFLU_RS11200 0.54 +1.6
2,477,045 + PFLU_RS11200 0.54 +1.4
2,477,045 + PFLU_RS11200 0.54 -2.1
2,477,045 + PFLU_RS11200 0.54 +0.2
2,477,045 + PFLU_RS11200 0.54 +1.1
2,477,045 + PFLU_RS11200 0.54 +1.8
2,477,045 + PFLU_RS11200 0.54 -1.8
2,477,046 - PFLU_RS11200 0.54 -2.1
2,477,046 - PFLU_RS11200 0.54 -1.9
2,477,046 - PFLU_RS11200 0.54 -1.0
2,477,046 - PFLU_RS11200 0.54 -0.6
2,477,046 - PFLU_RS11200 0.54 +1.2
2,477,046 - PFLU_RS11200 0.54 -0.0
2,477,046 - PFLU_RS11200 0.54 +2.0
2,477,048 + PFLU_RS11200 0.54 +1.0
2,477,048 + PFLU_RS11200 0.54 -0.5
2,477,048 + PFLU_RS11200 0.54 -2.2
2,477,049 - PFLU_RS11200 0.54 +1.9
2,477,049 - PFLU_RS11200 0.54 -2.4
2,477,049 - PFLU_RS11200 0.54 -0.8
2,477,049 - PFLU_RS11200 0.54 +1.6
2,477,049 - PFLU_RS11200 0.54 +0.9
2,477,049 - PFLU_RS11200 0.54 -3.1
2,477,123 + PFLU_RS11200 0.59 +2.2
2,477,123 + PFLU_RS11200 0.59 -0.0
2,477,123 + PFLU_RS11200 0.59 +1.8
2,477,124 - PFLU_RS11200 0.59 -1.9
2,477,124 - PFLU_RS11200 0.59 +1.7
2,477,124 - PFLU_RS11200 0.59 +0.7

Or see this region's nucleotide sequence