Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00965

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00960 and MMJJ_RS00965 are separated by 318 nucleotidesMMJJ_RS00965 and MMJJ_RS00970 are separated by 89 nucleotides MMJJ_RS00960: MMJJ_RS00960 - flavodoxin family protein, at 185,411 to 186,046 _RS00960 MMJJ_RS00965: MMJJ_RS00965 - cyclophilin-like fold protein, at 186,365 to 186,880 _RS00965 MMJJ_RS00970: MMJJ_RS00970 - aldo/keto reductase, at 186,970 to 188,082 _RS00970 Position (kb) 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 185.462 kb on - strandat 185.488 kb on - strand, within MMJJ_RS00960at 185.509 kb on - strand, within MMJJ_RS00960at 185.509 kb on - strand, within MMJJ_RS00960at 185.558 kb on - strand, within MMJJ_RS00960at 185.596 kb on + strand, within MMJJ_RS00960at 185.599 kb on - strand, within MMJJ_RS00960at 185.600 kb on + strand, within MMJJ_RS00960at 185.600 kb on + strand, within MMJJ_RS00960at 185.639 kb on + strand, within MMJJ_RS00960at 185.730 kb on + strand, within MMJJ_RS00960at 185.740 kb on - strand, within MMJJ_RS00960at 185.742 kb on - strand, within MMJJ_RS00960at 185.743 kb on + strand, within MMJJ_RS00960at 185.770 kb on - strand, within MMJJ_RS00960at 185.837 kb on + strand, within MMJJ_RS00960at 185.852 kb on - strand, within MMJJ_RS00960at 185.858 kb on + strand, within MMJJ_RS00960at 185.896 kb on - strand, within MMJJ_RS00960at 185.905 kb on - strand, within MMJJ_RS00960at 185.914 kb on - strand, within MMJJ_RS00960at 185.937 kb on - strand, within MMJJ_RS00960at 186.013 kb on - strandat 186.137 kb on - strandat 186.148 kb on - strandat 186.148 kb on - strandat 186.152 kb on - strandat 186.159 kb on + strandat 186.165 kb on + strandat 186.166 kb on - strandat 186.167 kb on + strandat 186.177 kb on + strandat 186.184 kb on - strandat 186.189 kb on - strandat 186.189 kb on - strandat 186.190 kb on + strandat 186.194 kb on - strandat 186.194 kb on - strandat 186.246 kb on - strandat 186.246 kb on - strandat 186.339 kb on - strandat 186.341 kb on - strandat 186.387 kb on + strandat 186.387 kb on + strandat 186.388 kb on - strandat 186.389 kb on + strandat 186.405 kb on + strandat 186.405 kb on + strandat 186.415 kb on - strandat 186.415 kb on - strandat 186.483 kb on - strand, within MMJJ_RS00965at 186.511 kb on - strand, within MMJJ_RS00965at 186.512 kb on + strand, within MMJJ_RS00965at 186.521 kb on - strand, within MMJJ_RS00965at 186.521 kb on - strand, within MMJJ_RS00965at 186.522 kb on + strand, within MMJJ_RS00965at 186.522 kb on + strand, within MMJJ_RS00965at 186.522 kb on + strand, within MMJJ_RS00965at 186.523 kb on - strand, within MMJJ_RS00965at 186.523 kb on - strand, within MMJJ_RS00965at 186.548 kb on - strand, within MMJJ_RS00965at 186.548 kb on - strand, within MMJJ_RS00965at 186.584 kb on - strand, within MMJJ_RS00965at 186.606 kb on - strand, within MMJJ_RS00965at 186.611 kb on + strand, within MMJJ_RS00965at 186.652 kb on - strand, within MMJJ_RS00965at 186.674 kb on - strand, within MMJJ_RS00965at 186.694 kb on - strand, within MMJJ_RS00965at 186.772 kb on - strand, within MMJJ_RS00965at 186.785 kb on + strand, within MMJJ_RS00965at 186.804 kb on - strand, within MMJJ_RS00965at 186.852 kb on + strandat 186.863 kb on + strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.935 kb on - strandat 186.936 kb on + strandat 186.961 kb on + strandat 187.002 kb on + strandat 187.036 kb on - strandat 187.037 kb on + strandat 187.037 kb on + strandat 187.154 kb on - strand, within MMJJ_RS00970at 187.154 kb on - strand, within MMJJ_RS00970at 187.155 kb on + strand, within MMJJ_RS00970at 187.173 kb on - strand, within MMJJ_RS00970at 187.207 kb on + strand, within MMJJ_RS00970at 187.212 kb on + strand, within MMJJ_RS00970at 187.221 kb on - strand, within MMJJ_RS00970at 187.253 kb on + strand, within MMJJ_RS00970at 187.262 kb on - strand, within MMJJ_RS00970at 187.290 kb on + strand, within MMJJ_RS00970at 187.297 kb on + strand, within MMJJ_RS00970at 187.338 kb on - strand, within MMJJ_RS00970at 187.371 kb on + strand, within MMJJ_RS00970at 187.375 kb on - strand, within MMJJ_RS00970at 187.376 kb on + strand, within MMJJ_RS00970at 187.377 kb on - strand, within MMJJ_RS00970at 187.445 kb on - strand, within MMJJ_RS00970at 187.446 kb on + strand, within MMJJ_RS00970at 187.523 kb on + strand, within MMJJ_RS00970at 187.575 kb on - strand, within MMJJ_RS00970at 187.651 kb on + strand, within MMJJ_RS00970at 187.734 kb on + strand, within MMJJ_RS00970at 187.734 kb on + strand, within MMJJ_RS00970at 187.761 kb on - strand, within MMJJ_RS00970at 187.762 kb on + strand, within MMJJ_RS00970at 187.762 kb on + strand, within MMJJ_RS00970at 187.829 kb on - strand, within MMJJ_RS00970at 187.830 kb on + strand, within MMJJ_RS00970at 187.847 kb on - strand, within MMJJ_RS00970at 187.861 kb on - strand, within MMJJ_RS00970at 187.861 kb on - strand, within MMJJ_RS00970at 187.862 kb on + strand, within MMJJ_RS00970at 187.876 kb on + strand, within MMJJ_RS00970

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
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185,462 - +0.5
185,488 - MMJJ_RS00960 0.12 -1.2
185,509 - MMJJ_RS00960 0.15 +2.1
185,509 - MMJJ_RS00960 0.15 -3.4
185,558 - MMJJ_RS00960 0.23 +0.1
185,596 + MMJJ_RS00960 0.29 -0.8
185,599 - MMJJ_RS00960 0.30 +0.4
185,600 + MMJJ_RS00960 0.30 -0.2
185,600 + MMJJ_RS00960 0.30 +0.3
185,639 + MMJJ_RS00960 0.36 +0.7
185,730 + MMJJ_RS00960 0.50 -0.2
185,740 - MMJJ_RS00960 0.52 +0.3
185,742 - MMJJ_RS00960 0.52 +0.1
185,743 + MMJJ_RS00960 0.52 -1.1
185,770 - MMJJ_RS00960 0.56 +0.4
185,837 + MMJJ_RS00960 0.67 +0.3
185,852 - MMJJ_RS00960 0.69 -0.2
185,858 + MMJJ_RS00960 0.70 -1.9
185,896 - MMJJ_RS00960 0.76 -1.3
185,905 - MMJJ_RS00960 0.78 +2.2
185,914 - MMJJ_RS00960 0.79 +0.8
185,937 - MMJJ_RS00960 0.83 +0.2
186,013 - +0.8
186,137 - +0.0
186,148 - -0.7
186,148 - -0.1
186,152 - -1.1
186,159 + +0.2
186,165 + -0.3
186,166 - -0.9
186,167 + -0.2
186,177 + -0.6
186,184 - +1.1
186,189 - -0.5
186,189 - -0.2
186,190 + +0.2
186,194 - +0.5
186,194 - -1.0
186,246 - -0.4
186,246 - -0.7
186,339 - +0.9
186,341 - -1.8
186,387 + -0.8
186,387 + -0.6
186,388 - +0.6
186,389 + -0.7
186,405 + +0.1
186,405 + -0.4
186,415 - -0.2
186,415 - -0.6
186,483 - MMJJ_RS00965 0.23 +1.2
186,511 - MMJJ_RS00965 0.28 +0.2
186,512 + MMJJ_RS00965 0.28 +0.8
186,521 - MMJJ_RS00965 0.30 +0.2
186,521 - MMJJ_RS00965 0.30 +0.9
186,522 + MMJJ_RS00965 0.30 -0.8
186,522 + MMJJ_RS00965 0.30 +0.4
186,522 + MMJJ_RS00965 0.30 +0.8
186,523 - MMJJ_RS00965 0.31 +1.7
186,523 - MMJJ_RS00965 0.31 +1.4
186,548 - MMJJ_RS00965 0.35 -0.2
186,548 - MMJJ_RS00965 0.35 +0.5
186,584 - MMJJ_RS00965 0.42 +0.4
186,606 - MMJJ_RS00965 0.47 -0.9
186,611 + MMJJ_RS00965 0.48 -1.3
186,652 - MMJJ_RS00965 0.56 -1.0
186,674 - MMJJ_RS00965 0.60 +0.3
186,694 - MMJJ_RS00965 0.64 -1.4
186,772 - MMJJ_RS00965 0.79 +2.1
186,785 + MMJJ_RS00965 0.81 +2.0
186,804 - MMJJ_RS00965 0.85 +0.1
186,852 + +0.6
186,863 + -1.1
186,935 - -1.7
186,935 - +0.2
186,935 - -1.0
186,936 + +1.0
186,961 + +0.1
187,002 + +0.8
187,036 - +0.7
187,037 + +1.8
187,037 + -0.0
187,154 - MMJJ_RS00970 0.17 +0.3
187,154 - MMJJ_RS00970 0.17 -1.3
187,155 + MMJJ_RS00970 0.17 +0.1
187,173 - MMJJ_RS00970 0.18 +0.8
187,207 + MMJJ_RS00970 0.21 +0.3
187,212 + MMJJ_RS00970 0.22 +0.2
187,221 - MMJJ_RS00970 0.23 -0.8
187,253 + MMJJ_RS00970 0.25 +0.1
187,262 - MMJJ_RS00970 0.26 +2.5
187,290 + MMJJ_RS00970 0.29 -0.0
187,297 + MMJJ_RS00970 0.29 -0.2
187,338 - MMJJ_RS00970 0.33 +0.5
187,371 + MMJJ_RS00970 0.36 +0.5
187,375 - MMJJ_RS00970 0.36 +0.0
187,376 + MMJJ_RS00970 0.36 +0.0
187,377 - MMJJ_RS00970 0.37 -0.9
187,445 - MMJJ_RS00970 0.43 -1.1
187,446 + MMJJ_RS00970 0.43 +0.1
187,523 + MMJJ_RS00970 0.50 -0.8
187,575 - MMJJ_RS00970 0.54 -0.8
187,651 + MMJJ_RS00970 0.61 +0.4
187,734 + MMJJ_RS00970 0.69 -2.0
187,734 + MMJJ_RS00970 0.69 -0.7
187,761 - MMJJ_RS00970 0.71 +0.6
187,762 + MMJJ_RS00970 0.71 -0.2
187,762 + MMJJ_RS00970 0.71 -0.4
187,829 - MMJJ_RS00970 0.77 +0.4
187,830 + MMJJ_RS00970 0.77 -0.9
187,847 - MMJJ_RS00970 0.79 +0.8
187,861 - MMJJ_RS00970 0.80 -1.2
187,861 - MMJJ_RS00970 0.80 -0.8
187,862 + MMJJ_RS00970 0.80 +0.6
187,876 + MMJJ_RS00970 0.81 -0.9

Or see this region's nucleotide sequence