Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09650

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
2,113,047	+				-2.0
2,113,047	+				+0.6
2,113,047	+				-1.3
2,113,047	+				+2.9
2,113,047	+				+2.1
2,113,047	+				-0.0
2,113,047	+				-1.1
2,113,047	+				-0.4
2,113,047	+				+0.1
2,113,047	+				+0.6
2,113,047	+				-2.3
2,113,047	+				-0.3
2,113,047	+				-0.8
2,113,047	+				+0.2
2,113,047	+				+0.6
2,113,047	+				+2.2
2,113,047	+				-1.1
2,113,047	+				-1.0
2,113,048	-				+0.1
2,113,048	-				-0.9
2,113,048	-				-0.7
2,113,048	-				+0.3
2,113,048	-				-0.7
2,113,048	-				-0.3
2,113,048	-				-1.5
2,113,048	-				-2.1
2,113,048	-				+0.4
2,113,048	-				-0.0
2,113,048	-				-1.7
2,113,048	-				-1.3
2,113,048	-				+0.2
2,113,048	-				-0.2
2,113,048	-				+0.9
2,113,048	-				-0.6
2,113,048	-				+0.7
2,113,048	-				-1.4
2,113,048	-				+0.8
2,113,054	+				-0.7
2,113,054	+				+0.1
2,113,054	+				-2.8
2,113,054	+				+1.3
2,113,055	-				-0.7
2,113,055	-				-0.2
2,113,055	-				-0.7
2,113,055	-				-0.0
2,113,055	-				-1.6
2,113,055	-				+0.5
2,113,055	-				-0.9
2,113,079	+				+0.5
2,113,079	+				-1.9
2,113,079	+				-0.7
2,113,079	+				+0.5
2,113,079	+				-2.3
2,113,079	+				-0.3
2,113,079	+				+0.4
2,113,079	+				-0.1
2,113,079	+				+0.0
2,113,079	+				+0.1
2,113,079	+				+0.0
2,113,079	+				+0.8
2,113,079	+				-0.4
2,113,080	-				+1.6
2,113,080	-				+0.1
2,113,080	-				+2.1
2,113,080	-				-0.1
2,113,080	-				+0.4
2,113,080	-				+1.8
2,113,080	-				-0.3
2,113,080	-				+0.7
2,113,097	+				+1.9
2,113,097	+				-1.6
2,113,097	+				-0.5
2,113,097	+				+0.5
2,113,097	+				+1.2
2,113,097	+				-1.5
2,113,097	+				-0.5
2,113,097	+				+0.7
2,113,097	+				+1.2
2,113,097	+				-1.7
2,113,098	-				+1.1
2,113,098	-				-0.5
2,113,098	-				+1.2
2,113,098	-				+0.4
2,113,098	-				-1.0
2,113,098	-				-0.2
2,113,098	-				+0.5
2,113,098	-				+0.8
2,113,154	+		LRK54_RS09640	0.23	-1.9
2,113,154	+		LRK54_RS09640	0.23	-1.7
2,113,154	+		LRK54_RS09640	0.23	-0.0
2,113,154	+		LRK54_RS09640	0.23	-2.2
2,113,154	+		LRK54_RS09640	0.23	+0.2
2,113,154	+		LRK54_RS09640	0.23	-1.2
2,113,154	+		LRK54_RS09640	0.23	-2.1
2,113,154	+		LRK54_RS09640	0.23	-1.3
2,113,154	+				+1.3
2,113,154	+		LRK54_RS09640	0.23	-0.1
2,113,154	+		LRK54_RS09640	0.23	+2.1
2,113,154	+		LRK54_RS09640	0.23	+0.0
2,113,154	+		LRK54_RS09640	0.23	-0.7
2,113,154	+		LRK54_RS09640	0.23	-1.0
2,113,154	+		LRK54_RS09640	0.23	+1.3
2,113,155	-		LRK54_RS09640	0.23	-0.8
2,113,155	-		LRK54_RS09640	0.23	+0.4
2,113,155	-		LRK54_RS09640	0.23	+1.1
2,113,155	-		LRK54_RS09640	0.23	-1.1
2,113,155	-		LRK54_RS09640	0.23	+2.1
2,113,155	-		LRK54_RS09640	0.23	+0.8
2,113,155	-		LRK54_RS09640	0.23	-0.5
2,113,155	-		LRK54_RS09640	0.23	-0.5
2,113,155	-		LRK54_RS09640	0.23	-0.3
2,113,155	-		LRK54_RS09640	0.23	-1.5
2,113,155	-		LRK54_RS09640	0.23	-1.6
2,113,155	-		LRK54_RS09640	0.23	-0.5
2,113,155	-		LRK54_RS09640	0.23	-0.4
2,113,155	-		LRK54_RS09640	0.23	-1.4
2,113,155	-		LRK54_RS09640	0.23	+1.0
2,113,155	-		LRK54_RS09640	0.23	+0.4
2,113,155	-		LRK54_RS09640	0.23	+0.3
2,113,163	+		LRK54_RS09640	0.25	-1.3
2,113,165	+		LRK54_RS09640	0.26	-2.7
2,113,165	+		LRK54_RS09640	0.26	-1.4
2,113,165	+		LRK54_RS09640	0.26	-0.2
2,113,166	-		LRK54_RS09640	0.26	+0.4
2,113,166	-		LRK54_RS09640	0.26	-1.4
2,113,166	-		LRK54_RS09640	0.26	-0.3
2,113,166	-		LRK54_RS09640	0.26	-0.7
2,113,166	-		LRK54_RS09640	0.26	+0.2
2,113,166	-		LRK54_RS09640	0.26	+0.7
2,113,166	-		LRK54_RS09640	0.26	+0.5
2,113,166	-		LRK54_RS09640	0.26	-1.5
2,113,166	-		LRK54_RS09640	0.26	+2.2
2,113,166	-		LRK54_RS09640	0.26	-1.8
2,113,166	-		LRK54_RS09640	0.26	-1.4
2,113,249	+		LRK54_RS09640	0.50	+2.2
2,113,249	+		LRK54_RS09640	0.50	-1.4
2,113,249	+		LRK54_RS09640	0.50	+1.7
2,113,249	+		LRK54_RS09640	0.50	-0.8
2,113,249	+		LRK54_RS09640	0.50	+2.8
2,113,249	+		LRK54_RS09640	0.50	-2.0
2,113,249	+		LRK54_RS09640	0.50	+1.4
2,113,249	+		LRK54_RS09640	0.50	+1.9
2,113,249	+		LRK54_RS09640	0.50	-0.8
2,113,249	+		LRK54_RS09640	0.50	-0.4
2,113,249	+		LRK54_RS09640	0.50	-1.5
2,113,249	+		LRK54_RS09640	0.50	-0.3
2,113,250	-		LRK54_RS09640	0.50	-0.5
2,113,250	-		LRK54_RS09640	0.50	+0.9
2,113,250	-		LRK54_RS09640	0.50	-0.1
2,113,250	-		LRK54_RS09640	0.50	+0.4
2,113,250	-		LRK54_RS09640	0.50	-0.4
2,113,250	-		LRK54_RS09640	0.50	-1.5
2,113,250	-		LRK54_RS09640	0.50	+1.5
2,113,250	-		LRK54_RS09640	0.50	-1.1
2,113,250	-		LRK54_RS09640	0.50	-0.2
2,113,250	-		LRK54_RS09640	0.50	+1.0
2,113,250	-		LRK54_RS09640	0.50	-0.8
2,113,278	-		LRK54_RS09640	0.58	+1.2
2,113,278	-		LRK54_RS09640	0.58	-1.4
2,113,340	-		LRK54_RS09640	0.75	-0.1
2,113,349	-		LRK54_RS09640	0.78	-1.2
2,113,429	+				+0.5
2,113,429	+				-1.4
2,113,429	+				-0.2
2,113,429	+				+2.3
2,113,429	+				+0.8
2,113,429	+				-0.2
2,113,429	+				-0.8
2,113,429	+				+0.9
2,113,429	+				+0.4
2,113,429	+				-0.3
2,113,429	+				-0.7
2,113,429	+				-0.8
2,113,429	+				-0.7
2,113,429	+				+0.6
2,113,429	+				+0.3
2,113,429	+				-0.5
2,113,429	+				+1.5
2,113,429	+				+0.1
2,113,429	+				-1.0
2,113,429	+				-1.8
2,113,429	+				-0.7
2,113,429	+				-1.4
2,113,429	+				-1.7
2,113,429	+				-1.9
2,113,429	+				+0.6
2,113,429	+				-1.3
2,113,429	+				+0.5
2,113,429	+				-1.0
2,113,429	+				-0.8
2,113,429	+				+0.6
2,113,429	+				-0.3
2,113,429	+				-0.1
2,113,429	+				+1.3
2,113,429	+				-1.7
2,113,429	+				+2.3
2,113,429	+				+0.4
2,113,429	+				+2.3
2,113,429	+				+0.9
2,113,429	+				+0.2
2,113,429	+				+1.9
2,113,429	+				+1.1
2,113,429	+				-0.3
2,113,429	+				-0.7
2,113,429	+				+1.5
2,113,429	+				-1.3
2,113,429	+				-1.0
2,113,429	+				-1.9
2,113,429	+				+0.8
2,113,429	+				-2.0
2,113,429	+				-1.9
2,113,429	+				-2.6
2,113,429	+				+0.5
2,113,429	+				+0.3
2,113,429	+				-1.1
2,113,429	+				-0.5
2,113,429	+				-1.1
2,113,429	+				-0.7
2,113,429	+				+1.9
2,113,430	-				+0.7
2,113,430	-				+0.6
2,113,430	-				+1.4
2,113,430	-				-0.4
2,113,430	-				-0.0
2,113,430	-				-2.1
2,113,430	-				-1.3
2,113,430	-				-0.5
2,113,430	-				-1.6
2,113,430	-				+0.0
2,113,430	-				-0.3
2,113,430	-				+0.4
2,113,430	-				+2.1
2,113,430	-				-0.1
2,113,430	-				+2.0
2,113,430	-				-0.4
2,113,430	-				+0.1
2,113,430	-				-0.3
2,113,430	-				+0.7
2,113,430	-				-0.2
2,113,430	-				+0.5
2,113,430	-				+1.2
2,113,430	-				-0.5
2,113,430	-				+0.3
2,113,430	-				+0.6
2,113,430	-				+0.6
2,113,430	-				+0.0
2,113,430	-				-1.6
2,113,430	-				-0.2
2,113,430	-				+1.3
2,113,430	-				+0.2
2,113,430	-				+0.5
2,113,430	-				+2.2
2,113,430	-				+1.3
2,113,430	-				-0.4
2,113,430	-				-0.3
2,113,430	-				-0.3
2,113,430	-				-0.4
2,113,430	-				-1.1
2,113,430	-				+1.9
2,113,430	-				+0.1
2,113,430	-				+0.5
2,113,430	-				+1.0
2,113,430	-				-0.3
2,113,430	-				-2.4
2,113,430	-				+1.0
2,113,430	-				+0.1
2,113,430	-				-1.6
2,113,430	-				-0.4
2,113,430	-				-0.1
2,113,460	+				-1.2
2,113,460	+				-0.3
2,113,460	+				-0.2
2,113,461	-				-0.4
2,113,465	+				-0.2
2,113,465	+				+1.2
2,113,465	+				-1.4
2,113,465	+				+0.8
2,113,466	-				+1.5
2,113,466	-				+0.1
2,113,466	-				+0.4
2,113,466	-				+0.1
2,113,466	-				+0.6
2,113,481	+				-0.8
2,113,574	+		LRK54_RS09645	0.19	+0.2
2,113,574	+		LRK54_RS09645	0.19	+0.8
2,113,574	+		LRK54_RS09645	0.19	+0.1
2,113,574	+		LRK54_RS09645	0.19	-0.0
2,113,574	+		LRK54_RS09645	0.19	+0.8
2,113,574	+		LRK54_RS09645	0.19	+0.5
2,113,574	+		LRK54_RS09645	0.19	+0.1
2,113,574	+		LRK54_RS09645	0.19	-0.9
2,113,574	+		LRK54_RS09645	0.19	-1.3
2,113,574	+		LRK54_RS09645	0.19	-1.9
2,113,575	-		LRK54_RS09645	0.19	+1.9
2,113,575	-		LRK54_RS09645	0.19	-0.2
2,113,575	-		LRK54_RS09645	0.19	+1.6
2,113,575	-		LRK54_RS09645	0.19	-1.5
2,113,575	-		LRK54_RS09645	0.19	+0.1
2,113,575	-		LRK54_RS09645	0.19	+0.5
2,113,575	-		LRK54_RS09645	0.19	+1.7
2,113,621	+		LRK54_RS09645	0.31	+0.1
2,113,621	+		LRK54_RS09645	0.31	-2.2
2,113,621	+		LRK54_RS09645	0.31	+0.6
2,113,622	-		LRK54_RS09645	0.31	+1.2
2,113,632	-		LRK54_RS09645	0.33	+0.4
2,113,632	-		LRK54_RS09645	0.33	-0.9
2,113,632	-		LRK54_RS09645	0.33	-1.6
2,113,632	-		LRK54_RS09645	0.33	+1.9
2,113,632	-		LRK54_RS09645	0.33	+0.3
2,113,633	+		LRK54_RS09645	0.34	-2.1
2,113,633	+		LRK54_RS09645	0.34	-0.1
2,113,633	+		LRK54_RS09645	0.34	-0.8
2,113,633	+		LRK54_RS09645	0.34	+0.7
2,113,633	+		LRK54_RS09645	0.34	-0.5
2,113,633	+		LRK54_RS09645	0.34	+1.1
2,113,633	+		LRK54_RS09645	0.34	-0.9
2,113,633	+		LRK54_RS09645	0.34	-0.7
2,113,633	+		LRK54_RS09645	0.34	+1.5
2,113,633	+		LRK54_RS09645	0.34	+0.6
2,113,633	+		LRK54_RS09645	0.34	-1.0
2,113,634	-		LRK54_RS09645	0.34	+0.6
2,113,634	-		LRK54_RS09645	0.34	+1.0
2,113,634	-		LRK54_RS09645	0.34	+0.1
2,113,634	-		LRK54_RS09645	0.34	+0.2
2,113,634	-		LRK54_RS09645	0.34	-0.0
2,113,634	-		LRK54_RS09645	0.34	+0.1
2,113,634	-		LRK54_RS09645	0.34	+0.6
2,113,634	-		LRK54_RS09645	0.34	+0.3
2,113,634	-		LRK54_RS09645	0.34	-0.3
2,113,634	-		LRK54_RS09645	0.34	+0.1
2,113,634	-		LRK54_RS09645	0.34	-0.3
2,113,634	-		LRK54_RS09645	0.34	+1.0
2,113,634	-		LRK54_RS09645	0.34	+1.4
2,113,634	-		LRK54_RS09645	0.34	+0.4
2,113,634	-		LRK54_RS09645	0.34	-0.1
2,113,634	-		LRK54_RS09645	0.34	+0.8
2,113,690	+		LRK54_RS09645	0.48	-0.7
2,113,690	+		LRK54_RS09645	0.48	-0.4
2,113,690	+		LRK54_RS09645	0.48	+0.5
2,113,690	+		LRK54_RS09645	0.48	-0.6
2,113,691	-		LRK54_RS09645	0.48	-0.3
2,113,691	-		LRK54_RS09645	0.48	+2.3
2,113,691	-		LRK54_RS09645	0.48	+1.1
2,113,691	-		LRK54_RS09645	0.48	-0.9
2,113,783	-		LRK54_RS09645	0.70	+0.5
2,113,783	-		LRK54_RS09645	0.70	-0.9
2,113,783	-		LRK54_RS09645	0.70	+1.7
2,113,783	-		LRK54_RS09645	0.70	+0.2
2,113,783	-		LRK54_RS09645	0.70	+0.1
2,113,783	-		LRK54_RS09645	0.70	+1.4
2,113,783	-		LRK54_RS09645	0.70	+0.3
2,113,783	-		LRK54_RS09645	0.70	+0.2
2,113,783	-		LRK54_RS09645	0.70	+0.1
2,113,783	-		LRK54_RS09645	0.70	-1.3
2,113,783	-		LRK54_RS09645	0.70	+2.1
2,113,783	-		LRK54_RS09645	0.70	+0.6
2,113,783	-		LRK54_RS09645	0.70	+0.4
2,113,783	-		LRK54_RS09645	0.70	-0.3
2,113,783	-		LRK54_RS09645	0.70	-0.1
2,113,783	-		LRK54_RS09645	0.70	-2.4
2,113,879	+				-0.4
2,113,879	+				-1.1
2,113,879	+				+0.2
2,113,880	-				+0.4
2,113,880	-				-0.5
2,113,880	-				-0.1
2,113,880	-				-0.4
2,113,981	+				-1.6
2,113,981	+				+1.5
2,113,981	+				-0.8
2,113,981	+				-1.2
2,113,981	+				-0.8
2,113,982	-				-0.0
2,113,982	-				+1.2
2,113,982	-				+0.4
2,113,982	-				-0.8
2,113,982	-				-0.1
2,114,020	+		LRK54_RS09650	0.16	-0.8
2,114,020	+		LRK54_RS09650	0.16	+0.6
2,114,020	+		LRK54_RS09650	0.16	-0.8
2,114,020	+		LRK54_RS09650	0.16	-0.3
2,114,020	+		LRK54_RS09650	0.16	-1.0
2,114,020	+		LRK54_RS09650	0.16	-0.9
2,114,020	+		LRK54_RS09650	0.16	-1.2
2,114,020	+		LRK54_RS09650	0.16	-0.9
2,114,020	+		LRK54_RS09650	0.16	-0.5
2,114,020	+		LRK54_RS09650	0.16	-0.4
2,114,020	+		LRK54_RS09650	0.16	-0.5
2,114,020	+		LRK54_RS09650	0.16	-0.6
2,114,021	-		LRK54_RS09650	0.17	-0.2
2,114,021	-		LRK54_RS09650	0.17	-0.4
2,114,021	-		LRK54_RS09650	0.17	+0.9
2,114,021	-		LRK54_RS09650	0.17	+0.5
2,114,021	-		LRK54_RS09650	0.17	-0.6
2,114,021	-		LRK54_RS09650	0.17	-1.4
2,114,021	-		LRK54_RS09650	0.17	+1.1
2,114,021	-		LRK54_RS09650	0.17	+0.9
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