Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09165

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
2,007,660	+				+1.3
2,007,660	+				+0.5
2,007,660	+				-0.2
2,007,661	-				-0.9
2,007,661	-				+0.7
2,007,661	-				+1.2
2,007,773	-				-0.4
2,007,773	-				-0.2
2,007,773	-				+1.1
2,007,773	-				-0.6
2,007,773	-				+1.3
2,007,773	-				-0.2
2,007,773	-				+0.4
2,007,773	-				+0.2
2,007,832	+				-0.0
2,007,832	+				+0.4
2,007,832	+				+3.9
2,007,832	+				+0.4
2,007,832	+				-1.9
2,007,833	-				+1.9
2,007,833	-				-0.2
2,007,850	-				-1.6
2,007,850	-				+0.5
2,007,899	+				-0.3
2,007,919	-				+1.5
2,007,933	+				+1.2
2,007,933	+				+1.1
2,007,933	+				+2.3
2,007,933	+				+2.5
2,007,933	+				+0.3
2,007,933	+				+0.3
2,007,933	+				+0.6
2,007,933	+				-0.5
2,007,933	+				+1.5
2,007,934	-				-0.5
2,007,934	-				+0.3
2,007,934	-				-2.8
2,007,934	-				-1.1
2,007,934	-				+1.2
2,007,934	-				-1.0
2,007,934	-				+1.2
2,007,934	-				+1.3
2,007,934	-				+2.2
2,007,935	+				-0.1
2,007,935	+				+1.1
2,007,935	+				-1.1
2,007,935	+				-0.4
2,007,935	+				+2.3
2,007,935	+				+0.1
2,007,935	+				-0.3
2,007,935	+				+0.7
2,007,935	+				+0.1
2,007,935	+				-1.1
2,007,935	+				+1.0
2,007,935	+				-1.6
2,007,935	+				+1.3
2,007,935	+				-0.6
2,007,935	+				+0.6
2,007,935	+				+1.0
2,007,935	+				-2.1
2,007,935	+				+0.2
2,007,935	+				+0.1
2,007,935	+				-0.8
2,007,935	+				-0.3
2,007,935	+				-0.8
2,007,935	+				+0.1
2,007,935	+				-1.9
2,007,936	-				-0.6
2,007,936	-				-0.7
2,007,936	-				-1.3
2,007,936	-				-0.6
2,007,936	-				+1.7
2,007,936	-				+1.4
2,007,936	-				-1.4
2,007,936	-				+2.3
2,007,936	-				+0.5
2,007,936	-				-1.0
2,007,936	-				-1.5
2,007,936	-				+2.1
2,007,936	-				+0.9
2,007,936	-				-0.5
2,007,936	-				+0.9
2,007,936	-				-0.7
2,007,936	-				+0.8
2,007,936	-				+0.8
2,007,936	-				-0.5
2,007,936	-				+1.4
2,007,936	-				+0.4
2,007,936	-				-1.8
2,007,936	-				+1.1
2,008,005	+				+1.5
2,008,005	+				-1.3
2,008,006	-				+0.9
2,008,006	-				-1.1
2,008,423	+		LRK54_RS09165	0.43	+0.2
2,008,423	+		LRK54_RS09165	0.43	+1.7
2,008,423	+		LRK54_RS09165	0.43	+0.1
2,008,423	+		LRK54_RS09165	0.43	-1.7
2,008,423	+		LRK54_RS09165	0.43	+0.3
2,008,423	+		LRK54_RS09165	0.43	-0.3
2,008,423	+		LRK54_RS09165	0.43	-0.1
2,008,424	-		LRK54_RS09165	0.43	-0.2
2,008,424	-		LRK54_RS09165	0.43	-0.9
2,008,424	-		LRK54_RS09165	0.43	+0.7
2,008,424	-		LRK54_RS09165	0.43	-1.8
2,008,424	-		LRK54_RS09165	0.43	+0.9
2,008,424	-		LRK54_RS09165	0.43	-1.8
2,008,424	-		LRK54_RS09165	0.43	-1.3
2,008,424	-		LRK54_RS09165	0.43	-0.6
2,008,424	-		LRK54_RS09165	0.43	-0.7
2,008,424	-		LRK54_RS09165	0.43	-0.4
2,008,444	+		LRK54_RS09165	0.46	+0.4
2,008,444	+		LRK54_RS09165	0.46	-0.7
2,008,444	+		LRK54_RS09165	0.46	-0.3
2,008,444	+		LRK54_RS09165	0.46	-1.1
2,008,444	+		LRK54_RS09165	0.46	+0.2
2,008,444	+		LRK54_RS09165	0.46	-0.7
2,008,444	+		LRK54_RS09165	0.46	-1.2
2,008,445	-		LRK54_RS09165	0.46	-0.1
2,008,445	-		LRK54_RS09165	0.46	+0.3
2,008,445	-		LRK54_RS09165	0.46	+1.7
2,008,445	-		LRK54_RS09165	0.46	+0.1
2,008,445	-		LRK54_RS09165	0.46	-0.8
2,008,445	-		LRK54_RS09165	0.46	+0.2
2,008,474	+		LRK54_RS09165	0.51	-1.1
2,008,474	+		LRK54_RS09165	0.51	-1.2
2,008,474	+		LRK54_RS09165	0.51	-0.5
2,008,474	+		LRK54_RS09165	0.51	-0.0
2,008,474	-		LRK54_RS09165	0.51	+1.1
2,008,475	-		LRK54_RS09165	0.51	-1.0
2,008,475	-		LRK54_RS09165	0.51	-0.7
2,008,475	-		LRK54_RS09165	0.51	-1.6
2,008,475	-		LRK54_RS09165	0.51	-1.9
2,008,475	-		LRK54_RS09165	0.51	-0.6
2,008,475	-		LRK54_RS09165	0.51	-0.2
2,008,475	-		LRK54_RS09165	0.51	-0.0
2,008,710	+		LRK54_RS09165	0.86	-1.4
2,008,710	+		LRK54_RS09165	0.86	-0.7
2,008,710	+		LRK54_RS09165	0.86	+2.0
2,008,711	-		LRK54_RS09165	0.86	-0.7
2,008,864	+				-0.1
2,008,864	+				+0.2
2,008,864	+				-0.0
2,008,865	-				-0.9
2,008,865	-				-1.0
2,008,865	-				-1.0
2,008,869	+				+2.0
2,008,869	+				-1.3
2,008,869	+				+0.3
2,008,869	+				+0.1
2,008,869	+				+0.0
2,008,869	+				+0.6
2,008,869	+				-1.2
2,008,869	+				-0.0
2,008,869	+				-0.3
2,008,869	+				+1.1
2,008,869	+				+0.8
2,008,869	+				+1.3
2,008,869	+				+0.9
2,008,869	+				-1.7
2,008,869	+				-0.8
2,008,869	+				+0.3
2,008,869	+				+0.1
2,008,869	+				+0.3
2,008,869	+				-0.3
2,008,869	+				-0.5
2,008,869	+				-0.5
2,008,899	+				-1.6
2,008,899	+				-0.8
2,008,899	+				+1.1
2,008,899	+				+0.7
2,008,899	+				-0.3
2,008,899	+				-0.9
2,008,899	+				-0.3
2,008,899	+				-2.3
2,008,899	+				+1.2
2,008,899	+				-0.5
2,008,899	+				+2.4
2,008,899	+				+0.0
2,008,899	+				-2.4
2,008,899	+				-1.0
2,008,899	+				-1.5
2,008,899	+				-1.0
2,008,899	+				-0.6
2,008,899	+				-0.6
2,008,899	+				+1.5
2,008,899	+				+1.4