Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07510

Experiment: R2A with Selective_ion_mix_1 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Selective_ion_mix_1 1 X
1,617,113	+		LRK54_RS07500	0.48	-0.8
1,617,113	+		LRK54_RS07500	0.48	-2.4
1,617,113	+		LRK54_RS07500	0.48	-0.3
1,617,113	+		LRK54_RS07500	0.48	-1.3
1,617,113	+		LRK54_RS07500	0.48	-0.6
1,617,113	+		LRK54_RS07500	0.48	-0.1
1,617,113	+		LRK54_RS07500	0.48	-1.2
1,617,113	+		LRK54_RS07500	0.48	-0.2
1,617,113	+		LRK54_RS07500	0.48	-1.7
1,617,113	+		LRK54_RS07500	0.48	-0.6
1,617,113	+		LRK54_RS07500	0.48	-0.5
1,617,113	+		LRK54_RS07500	0.48	+1.2
1,617,114	-		LRK54_RS07500	0.48	-0.7
1,617,114	-		LRK54_RS07500	0.48	-0.3
1,617,114	-		LRK54_RS07500	0.48	-1.9
1,617,114	-		LRK54_RS07500	0.48	-1.6
1,617,114	-		LRK54_RS07500	0.48	-1.0
1,617,114	-		LRK54_RS07500	0.48	+0.8
1,617,114	-		LRK54_RS07500	0.48	-0.2
1,617,114	-		LRK54_RS07500	0.48	+1.1
1,617,114	-		LRK54_RS07500	0.48	-0.4
1,617,114	-		LRK54_RS07500	0.48	+0.9
1,617,114	-		LRK54_RS07500	0.48	+0.3
1,617,114	-		LRK54_RS07500	0.48	+2.1
1,617,114	-		LRK54_RS07500	0.48	-1.2
1,617,293	+		LRK54_RS07500	0.79	-0.6
1,617,293	+		LRK54_RS07500	0.79	+0.5
1,617,294	-		LRK54_RS07500	0.79	+1.3
1,617,294	-		LRK54_RS07500	0.79	-0.2
1,617,294	-		LRK54_RS07500	0.79	-0.6
1,617,294	-		LRK54_RS07500	0.79	+2.0
1,617,294	-		LRK54_RS07500	0.79	-1.2
1,617,454	+				-1.5
1,617,454	+				+0.6
1,617,455	-				+1.9
1,617,898	+		LRK54_RS07505	0.73	-0.1
1,617,899	-		LRK54_RS07505	0.73	+2.1
1,617,899	-		LRK54_RS07505	0.73	+1.3
1,618,348	+		LRK54_RS07510	0.17	+0.1
1,618,348	+		LRK54_RS07510	0.17	+1.7
1,618,348	+		LRK54_RS07510	0.17	+0.5
1,618,391	+		LRK54_RS07510	0.20	+1.1
1,618,392	-		LRK54_RS07510	0.20	-1.6
1,618,392	-		LRK54_RS07510	0.20	+1.2
1,618,406	+		LRK54_RS07510	0.21	+0.7
1,618,406	+		LRK54_RS07510	0.21	+2.2
1,618,406	+		LRK54_RS07510	0.21	-0.5
1,618,406	+		LRK54_RS07510	0.21	-1.0
1,618,406	+		LRK54_RS07510	0.21	-0.2
1,618,407	-		LRK54_RS07510	0.21	-0.7
1,618,407	-		LRK54_RS07510	0.21	+2.3
1,618,407	-		LRK54_RS07510	0.21	-0.2
1,618,408	-		LRK54_RS07510	0.21	-0.8
1,618,538	+		LRK54_RS07510	0.30	-1.8
1,618,538	+		LRK54_RS07510	0.30	-2.1
1,618,538	+		LRK54_RS07510	0.30	-0.9
1,618,538	+		LRK54_RS07510	0.30	-0.9
1,618,538	+		LRK54_RS07510	0.30	-0.4
1,618,538	+		LRK54_RS07510	0.30	+1.3
1,618,538	+		LRK54_RS07510	0.30	+0.6
1,618,539	-		LRK54_RS07510	0.30	+0.6
1,618,539	-		LRK54_RS07510	0.30	-0.0
1,618,539	-		LRK54_RS07510	0.30	+0.2
1,618,539	-		LRK54_RS07510	0.30	+0.6
1,618,556	+		LRK54_RS07510	0.32	+1.5
1,618,557	-		LRK54_RS07510	0.32	+0.8
1,618,557	-		LRK54_RS07510	0.32	-0.7
1,618,557	-		LRK54_RS07510	0.32	-1.2
1,618,632	+		LRK54_RS07510	0.37	-1.5
1,618,633	-		LRK54_RS07510	0.37	-1.1
1,618,773	-		LRK54_RS07510	0.47	-1.2
1,618,773	-		LRK54_RS07510	0.47	-0.0
1,618,773	-		LRK54_RS07510	0.47	-0.1
1,618,925	+		LRK54_RS07510	0.58	-1.0
1,618,925	+		LRK54_RS07510	0.58	-0.3
1,618,925	+		LRK54_RS07510	0.58	-0.4
1,618,926	-		LRK54_RS07510	0.58	+1.0
1,618,926	-		LRK54_RS07510	0.58	-0.2
1,618,970	+		LRK54_RS07510	0.61	+2.1
1,618,970	+		LRK54_RS07510	0.61	-0.8
1,618,970	+		LRK54_RS07510	0.61	-0.6
1,618,970	+		LRK54_RS07510	0.61	-0.8
1,618,970	+		LRK54_RS07510	0.61	+1.2
1,618,970	+		LRK54_RS07510	0.61	+1.3
1,618,970	+		LRK54_RS07510	0.61	-1.1
1,618,970	+		LRK54_RS07510	0.61	-1.3
1,618,970	+		LRK54_RS07510	0.61	+1.5
1,618,970	+		LRK54_RS07510	0.61	-1.5
1,618,970	+		LRK54_RS07510	0.61	+1.3
1,618,971	-		LRK54_RS07510	0.61	+0.1
1,618,971	-		LRK54_RS07510	0.61	-1.7
1,618,971	-		LRK54_RS07510	0.61	-1.4
1,618,971	-		LRK54_RS07510	0.61	-0.3
1,618,971	-		LRK54_RS07510	0.61	+0.8
1,619,248	+		LRK54_RS07510	0.81	-1.7
1,619,248	+		LRK54_RS07510	0.81	-1.1
1,619,248	+		LRK54_RS07510	0.81	-0.5
1,619,248	+		LRK54_RS07510	0.81	-2.9
1,619,248	+		LRK54_RS07510	0.81	+1.8
1,619,248	+		LRK54_RS07510	0.81	-1.2
1,619,248	+		LRK54_RS07510	0.81	-0.6
1,619,248	+		LRK54_RS07510	0.81	-1.2
1,619,248	+		LRK54_RS07510	0.81	+1.7
1,619,248	+		LRK54_RS07510	0.81	+0.6
1,619,248	+		LRK54_RS07510	0.81	+1.8
1,619,249	-		LRK54_RS07510	0.81	+0.2
1,619,249	-		LRK54_RS07510	0.81	-1.1
1,619,249	-		LRK54_RS07510	0.81	-0.2
1,619,249	-		LRK54_RS07510	0.81	-0.2
1,619,249	-		LRK54_RS07510	0.81	-2.0
1,619,249	-		LRK54_RS07510	0.81	+0.0
1,619,297	+		LRK54_RS07510	0.84	+2.0
1,619,297	+		LRK54_RS07510	0.84	-1.9
1,619,297	+		LRK54_RS07510	0.84	+0.2
1,619,297	+		LRK54_RS07510	0.84	-0.5
1,619,298	-		LRK54_RS07510	0.84	+6.5
1,619,354	+		LRK54_RS07510	0.88	+0.9
1,619,354	+		LRK54_RS07510	0.88	-0.1
1,619,354	+		LRK54_RS07510	0.88	+0.3
1,619,354	+		LRK54_RS07510	0.88	-1.2
1,619,354	+		LRK54_RS07510	0.88	-1.7
1,619,354	+		LRK54_RS07510	0.88	-0.1
1,619,354	+		LRK54_RS07510	0.88	+1.8
1,619,354	+		LRK54_RS07510	0.88	-2.4
1,619,354	+		LRK54_RS07510	0.88	-2.0
1,619,354	+		LRK54_RS07510	0.88	-1.4
1,619,354	+		LRK54_RS07510	0.88	-0.6
1,619,354	+		LRK54_RS07510	0.88	-0.0
1,619,354	+		LRK54_RS07510	0.88	-0.5
1,619,354	+		LRK54_RS07510	0.88	-0.7
1,619,354	+		LRK54_RS07510	0.88	-1.9
1,619,354	+		LRK54_RS07510	0.88	-0.5
1,619,354	+		LRK54_RS07510	0.88	-1.4
1,619,354	+		LRK54_RS07510	0.88	+0.9
1,619,354	+		LRK54_RS07510	0.88	-1.2
1,619,355	-		LRK54_RS07510	0.88	-0.1
1,619,355	-		LRK54_RS07510	0.88	-1.9
1,619,355	-		LRK54_RS07510	0.88	-2.6
1,619,355	-		LRK54_RS07510	0.88	-1.5
1,619,355	-		LRK54_RS07510	0.88	+2.1
1,619,355	-		LRK54_RS07510	0.88	+1.3
1,619,355	-		LRK54_RS07510	0.88	-0.5
1,619,355	-		LRK54_RS07510	0.88	+1.0
1,619,355	-		LRK54_RS07510	0.88	+0.1
1,619,443	+				-1.7
1,619,443	+				+1.4
1,619,443	+				-2.9
1,619,443	+				+1.5
1,619,443	+				-1.1
1,619,443	+				-0.6
1,619,443	+				-1.1
1,619,443	+				-2.3
1,619,443	+				-1.5
1,619,444	-				+1.0
1,619,444	-				-0.5
1,619,444	-				-0.7
1,619,444	-				-1.5
1,619,444	-				+0.3
1,619,444	-				+1.6
1,619,444	-				-0.9
1,619,444	-				-0.4
1,619,447	+				+0.8
1,619,448	-				-3.2
1,619,448	-				-0.9
1,619,501	+				+1.2
1,619,501	+				+0.9
1,619,501	+				+0.6
1,619,502	-				-0.6
1,619,502	-				-2.4
1,619,502	-				-0.2
1,619,544	+				+0.3
1,619,544	+				+0.5
1,619,544	+				+0.8
1,619,545	-				+0.5
1,619,545	-				-0.8
1,619,818	+				+2.8
1,619,818	+				-1.0
1,619,818	+				-1.1
1,619,818	+				-0.5
1,619,819	-				-2.7
1,619,819	-				-1.5
1,619,819	-				+0.6
1,619,819	-				+0.9
1,619,854	+		LRK54_RS07515	0.15	-0.9
1,619,854	+		LRK54_RS07515	0.15	-0.0
1,619,854	+		LRK54_RS07515	0.15	-0.1
1,619,854	+		LRK54_RS07515	0.15	-0.2
1,619,854	+		LRK54_RS07515	0.15	+0.6
1,619,855	-		LRK54_RS07515	0.15	+0.5
1,619,855	-		LRK54_RS07515	0.15	-1.5
1,619,855	-		LRK54_RS07515	0.15	-0.6
1,619,855	-		LRK54_RS07515	0.15	+0.5
1,619,855	-		LRK54_RS07515	0.15	-0.4
1,619,855	-		LRK54_RS07515	0.15	+1.4
1,620,097	+		LRK54_RS07515	0.65	-1.2
1,620,097	+		LRK54_RS07515	0.65	+0.2
1,620,097	+		LRK54_RS07515	0.65	-1.3
1,620,097	+		LRK54_RS07515	0.65	-1.3
1,620,097	+		LRK54_RS07515	0.65	+0.3
1,620,098	-		LRK54_RS07515	0.65	+1.5
1,620,098	-		LRK54_RS07515	0.65	-1.8
1,620,166	+		LRK54_RS07515	0.79	-1.2
1,620,166	+		LRK54_RS07515	0.79	-1.4
1,620,296	-				-0.8
1,620,403	+				-1.4
1,620,403	+				-0.1
1,620,403	+				+0.1
1,620,403	+				-0.5
1,620,403	+				-1.1
1,620,403	+				-2.6
1,620,404	-				-0.8
1,620,404	-				-1.8
1,620,404	-				-0.6
1,620,428	+				-0.2
1,620,428	+				-0.6
1,620,428	+				-0.5
1,620,428	+				+0.3
1,620,428	+				+1.2
1,620,428	+				-1.4
1,620,428	+				-1.1
1,620,428	+				+0.1
1,620,428	+				-0.9
1,620,428	+				-1.2
1,620,428	+				-0.5
1,620,428	+				-0.8
1,620,428	+				-2.0
1,620,428	+				-0.9
1,620,428	+				-1.4
1,620,428	+				-1.3
1,620,428	+				-0.3
1,620,428	+				-2.4
1,620,428	+				+0.7
1,620,428	+				-0.9
1,620,428	+				-0.2
1,620,428	+				-0.5
1,620,429	-				-0.6
1,620,429	-				-0.6
1,620,429	-				+0.4
1,620,429	-				-1.9
1,620,429	-				-0.6
1,620,429	-				+1.3
1,620,429	-				-2.0
1,620,429	-				-0.2
1,620,429	-				+0.3
1,620,429	-				+1.7
1,620,429	-				-0.7
1,620,429	-				-1.6
1,620,429	-				+1.1
1,620,429	-				+1.6
1,620,429	-				-0.1
1,620,429	-				-2.1
1,620,429	-				-1.9
1,620,429	-				+0.3
1,620,429	-				+0.3
1,620,429	-				-0.6
1,620,429	-				+1.6