Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03085

Experiment: R2A with Selective_ion_mix_1 1 X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS03080 and LRK54_RS03085 are separated by 153 nucleotidesLRK54_RS03085 and LRK54_RS03090 overlap by 4 nucleotidesLRK54_RS03090 and LRK54_RS03095 are separated by 211 nucleotides LRK54_RS03080: LRK54_RS03080 - cysteine desulfurase, at 663,533 to 664,777 _RS03080 LRK54_RS03085: LRK54_RS03085 - Fe-S cluster assembly protein SufD, at 664,931 to 666,250 _RS03085 LRK54_RS03090: LRK54_RS03090 - Fe-S cluster assembly ATPase SufC, at 666,247 to 666,999 _RS03090 LRK54_RS03095: LRK54_RS03095 - Fe-S cluster assembly protein SufB, at 667,211 to 668,677 _RS03095 Position (kb) 664 665 666 667Strain fitness (log2 ratio) -1 0 1at 664.885 kb on + strandat 664.886 kb on - strandat 664.886 kb on - strandat 664.886 kb on - strandat 667.206 kb on - strandat 667.206 kb on - strandat 667.206 kb on - strandat 667.206 kb on - strandat 667.206 kb on - strandat 667.206 kb on - strandat 667.206 kb on - strandat 667.206 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Selective_ion_mix_1 1 X
remove
664,885 + -0.0
664,886 - -0.8
664,886 - -1.7
664,886 - +1.2
667,206 - +0.2
667,206 - +0.5
667,206 - -1.0
667,206 - -0.9
667,206 - +0.8
667,206 - -1.2
667,206 - -1.7
667,206 - +1.3

Or see this region's nucleotide sequence