Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03080

Experiment: R2A with Selective_ion_mix_1 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS03070 and LRK54_RS03075 are separated by 1 nucleotidesLRK54_RS03075 and LRK54_RS03080 are separated by 74 nucleotidesLRK54_RS03080 and LRK54_RS03085 are separated by 153 nucleotides LRK54_RS03070: LRK54_RS03070 - 2-dehydropantoate 2-reductase, at 661,622 to 662,542 _RS03070 LRK54_RS03075: LRK54_RS03075 - acyltransferase, at 662,544 to 663,458 _RS03075 LRK54_RS03080: LRK54_RS03080 - cysteine desulfurase, at 663,533 to 664,777 _RS03080 LRK54_RS03085: LRK54_RS03085 - Fe-S cluster assembly protein SufD, at 664,931 to 666,250 _RS03085 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.536 kb on + strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.537 kb on - strandat 662.544 kb on + strandat 662.665 kb on + strand, within LRK54_RS03075at 662.665 kb on + strand, within LRK54_RS03075at 662.665 kb on + strand, within LRK54_RS03075at 662.665 kb on + strand, within LRK54_RS03075at 662.665 kb on + strand, within LRK54_RS03075at 662.665 kb on + strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.666 kb on - strand, within LRK54_RS03075at 662.770 kb on + strand, within LRK54_RS03075at 663.028 kb on + strand, within LRK54_RS03075at 663.028 kb on + strand, within LRK54_RS03075at 663.029 kb on - strand, within LRK54_RS03075at 663.029 kb on - strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.193 kb on + strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.194 kb on - strand, within LRK54_RS03075at 663.395 kb on + strandat 663.395 kb on + strandat 663.395 kb on + strandat 663.396 kb on - strandat 663.396 kb on - strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.491 kb on + strandat 663.492 kb on - strandat 663.492 kb on - strandat 663.492 kb on - strandat 663.492 kb on - strandat 663.492 kb on - strandat 663.492 kb on - strandat 663.551 kb on + strandat 663.551 kb on + strandat 663.551 kb on + strandat 663.552 kb on - strandat 663.552 kb on - strandat 663.552 kb on - strandat 663.552 kb on - strandat 663.552 kb on - strandat 663.552 kb on - strandat 664.885 kb on + strandat 664.886 kb on - strandat 664.886 kb on - strandat 664.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Selective_ion_mix_1 1 X
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662,536 + +0.4
662,536 + +1.1
662,536 + +0.1
662,536 + +0.0
662,536 + +0.8
662,536 + -1.6
662,536 + -1.6
662,536 + -1.1
662,536 + +3.9
662,536 + -1.4
662,536 + +0.7
662,536 + +1.7
662,536 + -1.2
662,536 + -0.3
662,536 + -2.0
662,537 - -0.2
662,537 - +0.2
662,537 - -1.0
662,537 - +1.3
662,537 - +1.4
662,537 - -0.4
662,537 - -0.4
662,537 - +2.2
662,537 - -0.2
662,537 - +0.7
662,537 - +1.0
662,544 + -0.0
662,665 + LRK54_RS03075 0.13 +1.6
662,665 + LRK54_RS03075 0.13 -0.0
662,665 + LRK54_RS03075 0.13 +0.9
662,665 + LRK54_RS03075 0.13 +0.5
662,665 + LRK54_RS03075 0.13 +1.4
662,665 + LRK54_RS03075 0.13 +0.5
662,666 - LRK54_RS03075 0.13 +0.1
662,666 - LRK54_RS03075 0.13 -0.3
662,666 - LRK54_RS03075 0.13 -1.8
662,666 - LRK54_RS03075 0.13 +1.2
662,666 - LRK54_RS03075 0.13 -1.0
662,666 - LRK54_RS03075 0.13 +0.0
662,666 - LRK54_RS03075 0.13 +0.6
662,666 - LRK54_RS03075 0.13 +0.2
662,666 - LRK54_RS03075 0.13 -1.2
662,666 - LRK54_RS03075 0.13 +1.3
662,666 - LRK54_RS03075 0.13 -1.1
662,666 - LRK54_RS03075 0.13 +1.0
662,666 - LRK54_RS03075 0.13 -0.0
662,770 + LRK54_RS03075 0.25 -0.2
663,028 + LRK54_RS03075 0.53 +0.9
663,028 + LRK54_RS03075 0.53 +1.2
663,029 - LRK54_RS03075 0.53 -1.1
663,029 - LRK54_RS03075 0.53 +2.0
663,193 + LRK54_RS03075 0.71 -0.1
663,193 + LRK54_RS03075 0.71 -0.1
663,193 + LRK54_RS03075 0.71 +0.8
663,193 + LRK54_RS03075 0.71 +0.1
663,193 + LRK54_RS03075 0.71 -0.2
663,193 + LRK54_RS03075 0.71 +0.4
663,193 + LRK54_RS03075 0.71 +0.6
663,193 + LRK54_RS03075 0.71 +1.3
663,193 + LRK54_RS03075 0.71 +0.2
663,193 + LRK54_RS03075 0.71 +1.2
663,193 + LRK54_RS03075 0.71 -0.9
663,193 + LRK54_RS03075 0.71 +0.5
663,193 + LRK54_RS03075 0.71 +0.4
663,193 + LRK54_RS03075 0.71 +0.7
663,193 + LRK54_RS03075 0.71 +0.7
663,193 + LRK54_RS03075 0.71 -0.5
663,194 - LRK54_RS03075 0.71 +0.3
663,194 - LRK54_RS03075 0.71 -0.2
663,194 - LRK54_RS03075 0.71 +0.9
663,194 - LRK54_RS03075 0.71 -0.1
663,194 - LRK54_RS03075 0.71 -0.5
663,194 - LRK54_RS03075 0.71 +1.4
663,194 - LRK54_RS03075 0.71 +0.9
663,194 - LRK54_RS03075 0.71 +0.5
663,194 - LRK54_RS03075 0.71 +0.4
663,194 - LRK54_RS03075 0.71 -0.7
663,194 - LRK54_RS03075 0.71 +1.7
663,194 - LRK54_RS03075 0.71 -1.2
663,194 - LRK54_RS03075 0.71 +0.3
663,194 - LRK54_RS03075 0.71 -0.6
663,194 - LRK54_RS03075 0.71 -0.0
663,194 - LRK54_RS03075 0.71 +0.4
663,194 - LRK54_RS03075 0.71 -2.2
663,395 + +1.5
663,395 + +2.0
663,395 + -1.7
663,396 - -0.3
663,396 - -1.0
663,491 + -0.3
663,491 + +0.8
663,491 + -0.2
663,491 + +0.3
663,491 + +0.7
663,491 + +0.6
663,491 + -1.0
663,491 + +2.4
663,491 + -0.8
663,492 - -1.8
663,492 - +0.0
663,492 - -0.7
663,492 - -1.4
663,492 - +2.2
663,492 - -0.2
663,551 + +0.2
663,551 + +1.5
663,551 + -0.3
663,552 - +1.6
663,552 - -0.1
663,552 - +1.3
663,552 - +0.8
663,552 - +1.1
663,552 - -0.5
664,885 + -0.0
664,886 - -0.8
664,886 - -1.7
664,886 - +1.2

Or see this region's nucleotide sequence