Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23260 and HSERO_RS23265 overlap by 4 nucleotides HSERO_RS23265 and HSERO_RS23270 overlap by 4 nucleotides HSERO_RS23270 and HSERO_RS23275 are separated by 168 nucleotides
HSERO_RS23260: HSERO_RS23260 - ABC transporter permease, at 5,338,359 to 5,339,363
_RS23260
HSERO_RS23265: HSERO_RS23265 - ABC transporter, at 5,339,360 to 5,340,127
_RS23265
HSERO_RS23270: HSERO_RS23270 - ABC transporter, at 5,340,124 to 5,340,828
_RS23270
HSERO_RS23275: HSERO_RS23275 - allantoate amidohydrolase, at 5,340,997 to 5,342,256
_RS23275
Position (kb) 5340
5341 Strain fitness (log2 ratio) -1
0
1
2 at 5339.135 kb on + strand, within HSERO_RS23260 at 5339.148 kb on - strand, within HSERO_RS23260 at 5339.446 kb on + strand, within HSERO_RS23265 at 5339.952 kb on + strand, within HSERO_RS23265 at 5339.960 kb on - strand, within HSERO_RS23265 at 5340.054 kb on - strand at 5340.228 kb on - strand, within HSERO_RS23270 at 5340.228 kb on - strand, within HSERO_RS23270 at 5340.253 kb on + strand, within HSERO_RS23270 at 5340.261 kb on - strand, within HSERO_RS23270 at 5340.396 kb on + strand, within HSERO_RS23270 at 5340.657 kb on - strand at 5340.689 kb on + strand, within HSERO_RS23270 at 5340.881 kb on - strand at 5340.897 kb on + strand at 5340.947 kb on - strand at 5341.037 kb on + strand at 5341.058 kb on - strand at 5341.253 kb on - strand, within HSERO_RS23275 at 5341.263 kb on + strand, within HSERO_RS23275 at 5341.361 kb on - strand, within HSERO_RS23275 at 5341.376 kb on + strand, within HSERO_RS23275 at 5341.402 kb on + strand, within HSERO_RS23275 at 5341.542 kb on + strand, within HSERO_RS23275 at 5341.542 kb on + strand, within HSERO_RS23275 at 5341.650 kb on - strand, within HSERO_RS23275 at 5341.661 kb on - strand, within HSERO_RS23275 at 5341.706 kb on - strand, within HSERO_RS23275 at 5341.778 kb on + strand, within HSERO_RS23275
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 5,339,135 + HSERO_RS23260 0.77 -0.7 5,339,148 - HSERO_RS23260 0.79 -0.6 5,339,446 + HSERO_RS23265 0.11 -0.7 5,339,952 + HSERO_RS23265 0.77 +0.3 5,339,960 - HSERO_RS23265 0.78 +0.4 5,340,054 - -0.6 5,340,228 - HSERO_RS23270 0.15 -1.0 5,340,228 - HSERO_RS23270 0.15 +1.6 5,340,253 + HSERO_RS23270 0.18 +0.4 5,340,261 - HSERO_RS23270 0.19 -0.6 5,340,396 + HSERO_RS23270 0.39 +1.0 5,340,657 - +2.4 5,340,689 + HSERO_RS23270 0.80 +0.7 5,340,881 - +0.8 5,340,897 + -0.3 5,340,947 - +0.3 5,341,037 + +0.8 5,341,058 - +0.0 5,341,253 - HSERO_RS23275 0.20 -1.1 5,341,263 + HSERO_RS23275 0.21 -1.1 5,341,361 - HSERO_RS23275 0.29 +0.3 5,341,376 + HSERO_RS23275 0.30 +0.6 5,341,402 + HSERO_RS23275 0.32 +0.0 5,341,542 + HSERO_RS23275 0.43 -1.0 5,341,542 + HSERO_RS23275 0.43 -1.1 5,341,650 - HSERO_RS23275 0.52 +0.1 5,341,661 - HSERO_RS23275 0.53 -0.3 5,341,706 - HSERO_RS23275 0.56 +0.2 5,341,778 + HSERO_RS23275 0.62 +0.4
Or see this region's nucleotide sequence