Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19570 and HSERO_RS19575 are separated by 149 nucleotides HSERO_RS19575 and HSERO_RS19580 are separated by 108 nucleotides HSERO_RS19580 and HSERO_RS19585 are separated by 196 nucleotides
HSERO_RS19570: HSERO_RS19570 - ribose-phosphate pyrophosphokinase, at 4,484,113 to 4,485,063
_RS19570
HSERO_RS19575: HSERO_RS19575 - 50S ribosomal protein L25, at 4,485,213 to 4,485,821
_RS19575
HSERO_RS19580: HSERO_RS19580 - SPFH domain-containing protein, at 4,485,930 to 4,487,399
_RS19580
HSERO_RS19585: HSERO_RS19585 - peptidase M61, at 4,487,596 to 4,489,398
_RS19585
Position (kb) 4485
4486
4487
4488 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4485.512 kb on + strand, within HSERO_RS19575 at 4485.680 kb on + strand, within HSERO_RS19575 at 4485.989 kb on + strand at 4486.135 kb on + strand, within HSERO_RS19580 at 4486.180 kb on - strand, within HSERO_RS19580 at 4486.246 kb on - strand, within HSERO_RS19580 at 4486.434 kb on - strand, within HSERO_RS19580 at 4486.510 kb on + strand, within HSERO_RS19580 at 4486.572 kb on - strand, within HSERO_RS19580 at 4486.706 kb on - strand, within HSERO_RS19580 at 4486.714 kb on - strand, within HSERO_RS19580 at 4486.747 kb on - strand, within HSERO_RS19580 at 4486.801 kb on + strand, within HSERO_RS19580 at 4487.008 kb on + strand, within HSERO_RS19580 at 4487.438 kb on + strand at 4487.607 kb on + strand at 4487.699 kb on + strand at 4487.926 kb on + strand, within HSERO_RS19585 at 4488.040 kb on - strand, within HSERO_RS19585 at 4488.305 kb on + strand, within HSERO_RS19585 at 4488.347 kb on - strand, within HSERO_RS19585
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,485,512 + HSERO_RS19575 0.49 -1.2 4,485,680 + HSERO_RS19575 0.77 -0.6 4,485,989 + -0.5 4,486,135 + HSERO_RS19580 0.14 +0.9 4,486,180 - HSERO_RS19580 0.17 -0.6 4,486,246 - HSERO_RS19580 0.21 +0.8 4,486,434 - HSERO_RS19580 0.34 +2.6 4,486,510 + HSERO_RS19580 0.39 +0.5 4,486,572 - HSERO_RS19580 0.44 +0.8 4,486,706 - HSERO_RS19580 0.53 +3.0 4,486,714 - HSERO_RS19580 0.53 +1.2 4,486,747 - HSERO_RS19580 0.56 -1.8 4,486,801 + HSERO_RS19580 0.59 -0.8 4,487,008 + HSERO_RS19580 0.73 +1.5 4,487,438 + -1.0 4,487,607 + -0.2 4,487,699 + +0.1 4,487,926 + HSERO_RS19585 0.18 +2.0 4,488,040 - HSERO_RS19585 0.25 -0.7 4,488,305 + HSERO_RS19585 0.39 +0.1 4,488,347 - HSERO_RS19585 0.42 +0.0
Or see this region's nucleotide sequence