Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18965 and HSERO_RS18970 are separated by 48 nucleotides HSERO_RS18970 and HSERO_RS18975 are separated by 38 nucleotides HSERO_RS18975 and HSERO_RS18980 are separated by 283 nucleotides HSERO_RS18980 and HSERO_RS18985 are separated by 35 nucleotides
HSERO_RS18965: HSERO_RS18965 - thiopurine S-methyltransferase, at 4,352,556 to 4,353,215
_RS18965
HSERO_RS18970: HSERO_RS18970 - hypothetical protein, at 4,353,264 to 4,353,626
_RS18970
HSERO_RS18975: HSERO_RS18975 - hypothetical protein, at 4,353,665 to 4,353,955
_RS18975
HSERO_RS18980: HSERO_RS18980 - hypothetical protein, at 4,354,239 to 4,354,466
_RS18980
HSERO_RS18985: HSERO_RS18985 - NlpD lipoprotein, at 4,354,502 to 4,355,266
_RS18985
Position (kb) 4353
4354 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4352.928 kb on + strand, within HSERO_RS18965 at 4352.976 kb on + strand, within HSERO_RS18965 at 4353.001 kb on + strand, within HSERO_RS18965 at 4353.304 kb on + strand, within HSERO_RS18970 at 4353.465 kb on - strand, within HSERO_RS18970 at 4353.510 kb on - strand, within HSERO_RS18970 at 4353.545 kb on + strand, within HSERO_RS18970 at 4353.720 kb on + strand, within HSERO_RS18975 at 4353.720 kb on + strand, within HSERO_RS18975 at 4353.928 kb on + strand at 4353.928 kb on + strand at 4353.936 kb on - strand at 4353.936 kb on - strand at 4354.141 kb on + strand at 4354.159 kb on + strand at 4354.237 kb on + strand at 4354.245 kb on - strand at 4354.252 kb on - strand at 4354.272 kb on - strand, within HSERO_RS18980 at 4354.421 kb on - strand, within HSERO_RS18980 at 4354.609 kb on + strand, within HSERO_RS18985 at 4354.634 kb on - strand, within HSERO_RS18985 at 4354.650 kb on + strand, within HSERO_RS18985 at 4354.650 kb on + strand, within HSERO_RS18985 at 4354.697 kb on - strand, within HSERO_RS18985 at 4354.868 kb on - strand, within HSERO_RS18985 at 4354.943 kb on + strand, within HSERO_RS18985
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,352,928 + HSERO_RS18965 0.56 +1.4 4,352,976 + HSERO_RS18965 0.64 -2.1 4,353,001 + HSERO_RS18965 0.67 -0.9 4,353,304 + HSERO_RS18970 0.11 +0.2 4,353,465 - HSERO_RS18970 0.55 -1.2 4,353,510 - HSERO_RS18970 0.68 -0.9 4,353,545 + HSERO_RS18970 0.77 -1.9 4,353,720 + HSERO_RS18975 0.19 +0.5 4,353,720 + HSERO_RS18975 0.19 +1.2 4,353,928 + -2.4 4,353,928 + -1.1 4,353,936 - -0.4 4,353,936 - -0.4 4,354,141 + +1.3 4,354,159 + +0.5 4,354,237 + -0.7 4,354,245 - -0.4 4,354,252 - +1.0 4,354,272 - HSERO_RS18980 0.14 -0.7 4,354,421 - HSERO_RS18980 0.80 -0.9 4,354,609 + HSERO_RS18985 0.14 -1.4 4,354,634 - HSERO_RS18985 0.17 +1.9 4,354,650 + HSERO_RS18985 0.19 +0.1 4,354,650 + HSERO_RS18985 0.19 -0.6 4,354,697 - HSERO_RS18985 0.25 +0.7 4,354,868 - HSERO_RS18985 0.48 -1.0 4,354,943 + HSERO_RS18985 0.58 -3.2
Or see this region's nucleotide sequence