Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08775

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08770 and HSERO_RS08775 overlap by 4 nucleotidesHSERO_RS08775 and HSERO_RS08780 are separated by 269 nucleotides HSERO_RS08770: HSERO_RS08770 - membrane protein, at 1,990,244 to 1,991,230 _RS08770 HSERO_RS08775: HSERO_RS08775 - membrane protein, at 1,991,227 to 1,991,952 _RS08775 HSERO_RS08780: HSERO_RS08780 - LamB/YcsF family protein, at 1,992,222 to 1,992,962 _RS08780 Position (kb) 1991 1992Strain fitness (log2 ratio) -1 0 1at 1990.462 kb on + strand, within HSERO_RS08770at 1990.607 kb on + strand, within HSERO_RS08770at 1990.851 kb on + strand, within HSERO_RS08770at 1990.866 kb on + strand, within HSERO_RS08770at 1991.043 kb on + strand, within HSERO_RS08770at 1991.215 kb on + strandat 1991.593 kb on - strand, within HSERO_RS08775at 1991.712 kb on + strand, within HSERO_RS08775at 1992.208 kb on - strandat 1992.638 kb on - strand, within HSERO_RS08780

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,990,462 + HSERO_RS08770 0.22 -0.2
1,990,607 + HSERO_RS08770 0.37 +0.1
1,990,851 + HSERO_RS08770 0.61 +0.8
1,990,866 + HSERO_RS08770 0.63 +0.4
1,991,043 + HSERO_RS08770 0.81 +0.1
1,991,215 + +0.3
1,991,593 - HSERO_RS08775 0.50 +0.6
1,991,712 + HSERO_RS08775 0.67 +0.9
1,992,208 - -0.2
1,992,638 - HSERO_RS08780 0.56 +1.1

Or see this region's nucleotide sequence