Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04945

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04940 and HSERO_RS04945 are separated by 77 nucleotidesHSERO_RS04945 and HSERO_RS04950 are separated by 216 nucleotides HSERO_RS04940: HSERO_RS04940 - TonB-denpendent receptor, at 1,085,404 to 1,087,575 _RS04940 HSERO_RS04945: HSERO_RS04945 - murein transglycosylase, at 1,087,653 to 1,088,792 _RS04945 HSERO_RS04950: HSERO_RS04950 - deacetylase, at 1,089,009 to 1,089,950 _RS04950 Position (kb) 1087 1088 1089Strain fitness (log2 ratio) -1 0 1 2 3at 1086.718 kb on + strand, within HSERO_RS04940at 1086.736 kb on + strand, within HSERO_RS04940at 1086.760 kb on - strand, within HSERO_RS04940at 1086.780 kb on + strand, within HSERO_RS04940at 1087.034 kb on - strand, within HSERO_RS04940at 1087.560 kb on - strandat 1087.593 kb on - strandat 1087.797 kb on + strand, within HSERO_RS04945at 1087.830 kb on + strand, within HSERO_RS04945at 1088.459 kb on + strand, within HSERO_RS04945at 1088.530 kb on + strand, within HSERO_RS04945at 1088.758 kb on - strandat 1088.864 kb on - strandat 1088.880 kb on + strandat 1089.171 kb on + strand, within HSERO_RS04950at 1089.228 kb on + strand, within HSERO_RS04950at 1089.352 kb on - strand, within HSERO_RS04950at 1089.379 kb on - strand, within HSERO_RS04950at 1089.459 kb on + strand, within HSERO_RS04950at 1089.466 kb on + strand, within HSERO_RS04950at 1089.769 kb on - strand, within HSERO_RS04950

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,086,718 + HSERO_RS04940 0.60 -0.8
1,086,736 + HSERO_RS04940 0.61 -0.0
1,086,760 - HSERO_RS04940 0.62 +0.6
1,086,780 + HSERO_RS04940 0.63 +0.2
1,087,034 - HSERO_RS04940 0.75 +3.0
1,087,560 - +1.1
1,087,593 - +3.2
1,087,797 + HSERO_RS04945 0.13 +1.6
1,087,830 + HSERO_RS04945 0.16 -0.9
1,088,459 + HSERO_RS04945 0.71 +0.7
1,088,530 + HSERO_RS04945 0.77 +0.5
1,088,758 - +0.0
1,088,864 - -1.5
1,088,880 + -1.0
1,089,171 + HSERO_RS04950 0.17 +0.6
1,089,228 + HSERO_RS04950 0.23 -0.1
1,089,352 - HSERO_RS04950 0.36 +0.3
1,089,379 - HSERO_RS04950 0.39 +0.2
1,089,459 + HSERO_RS04950 0.48 -0.4
1,089,466 + HSERO_RS04950 0.49 +0.1
1,089,769 - HSERO_RS04950 0.81 +0.5

Or see this region's nucleotide sequence