Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01855 and HSERO_RS01860 are separated by 19 nucleotides HSERO_RS01860 and HSERO_RS01865 are separated by 1 nucleotides HSERO_RS01865 and HSERO_RS01870 are separated by 133 nucleotides HSERO_RS01870 and HSERO_RS01875 overlap by 4 nucleotides
HSERO_RS01855: HSERO_RS01855 - myristoyl transferase, at 407,919 to 408,878
_RS01855
HSERO_RS01860: HSERO_RS01860 - sulfonate ABC transporter permease, at 408,898 to 409,719
_RS01860
HSERO_RS01865: HSERO_RS01865 - sulfonate ABC transporter ATP-binding protein, at 409,721 to 410,530
_RS01865
HSERO_RS01870: HSERO_RS01870 - ABC transporter permease, at 410,664 to 411,476
_RS01870
HSERO_RS01875: HSERO_RS01875 - hypothetical protein, at 411,473 to 411,757
_RS01875
Position (kb) 409
410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 408.869 kb on - strand at 408.875 kb on - strand at 408.886 kb on + strand at 408.963 kb on + strand at 408.980 kb on - strand at 409.056 kb on + strand, within HSERO_RS01860 at 409.064 kb on - strand, within HSERO_RS01860 at 409.064 kb on - strand, within HSERO_RS01860 at 409.205 kb on + strand, within HSERO_RS01860 at 409.311 kb on - strand at 409.326 kb on + strand, within HSERO_RS01860 at 409.493 kb on - strand, within HSERO_RS01860 at 409.493 kb on - strand, within HSERO_RS01860 at 409.495 kb on - strand, within HSERO_RS01860 at 409.495 kb on - strand, within HSERO_RS01860 at 409.569 kb on - strand, within HSERO_RS01860 at 409.749 kb on + strand at 409.749 kb on + strand at 409.757 kb on - strand at 409.915 kb on - strand, within HSERO_RS01865 at 410.090 kb on + strand, within HSERO_RS01865 at 410.483 kb on - strand at 410.489 kb on + strand at 410.514 kb on - strand at 410.540 kb on + strand at 410.638 kb on + strand at 410.649 kb on + strand at 410.657 kb on - strand at 410.696 kb on + strand at 410.789 kb on + strand, within HSERO_RS01870 at 411.213 kb on - strand, within HSERO_RS01870 at 411.253 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870 at 411.385 kb on + strand, within HSERO_RS01870
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 408,869 - -0.5 408,875 - +0.0 408,886 + -0.4 408,963 + +0.4 408,980 - +2.2 409,056 + HSERO_RS01860 0.19 +0.4 409,064 - HSERO_RS01860 0.20 +0.6 409,064 - HSERO_RS01860 0.20 -0.2 409,205 + HSERO_RS01860 0.37 -0.3 409,311 - +0.2 409,326 + HSERO_RS01860 0.52 -0.0 409,493 - HSERO_RS01860 0.72 -1.8 409,493 - HSERO_RS01860 0.72 -1.3 409,495 - HSERO_RS01860 0.73 -0.4 409,495 - HSERO_RS01860 0.73 -0.3 409,569 - HSERO_RS01860 0.82 -0.0 409,749 + +0.6 409,749 + -0.1 409,757 - +0.7 409,915 - HSERO_RS01865 0.24 +0.0 410,090 + HSERO_RS01865 0.46 +1.7 410,483 - -0.1 410,489 + -0.3 410,514 - +0.6 410,540 + -3.1 410,638 + -0.0 410,649 + -0.4 410,657 - +0.5 410,696 + +0.7 410,789 + HSERO_RS01870 0.15 -0.7 411,213 - HSERO_RS01870 0.68 -1.2 411,253 + HSERO_RS01870 0.72 -0.1 411,385 + HSERO_RS01870 0.89 -0.9 411,385 + HSERO_RS01870 0.89 +0.4
Or see this region's nucleotide sequence