Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00845

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS00840 and HSERO_RS00845 are separated by 163 nucleotidesHSERO_RS00845 and HSERO_RS00850 are separated by 181 nucleotides HSERO_RS00840: HSERO_RS00840 - molecular chaperone DnaK, at 174,734 to 175,138 _RS00840 HSERO_RS00845: HSERO_RS00845 - hypothetical protein, at 175,302 to 175,721 _RS00845 HSERO_RS00850: HSERO_RS00850 - TonB-dependent receptor, at 175,903 to 177,975 _RS00850 Position (kb) 175 176Strain fitness (log2 ratio) -1 0 1 2at 175.237 kb on - strandat 175.327 kb on + strandat 175.476 kb on + strand, within HSERO_RS00845at 175.501 kb on + strand, within HSERO_RS00845at 175.647 kb on - strand, within HSERO_RS00845at 175.779 kb on + strandat 175.814 kb on + strandat 175.975 kb on + strandat 176.311 kb on - strand, within HSERO_RS00850at 176.311 kb on - strand, within HSERO_RS00850at 176.400 kb on - strand, within HSERO_RS00850at 176.649 kb on - strand, within HSERO_RS00850at 176.695 kb on - strand, within HSERO_RS00850

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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175,237 - +0.3
175,327 + -0.9
175,476 + HSERO_RS00845 0.41 +1.2
175,501 + HSERO_RS00845 0.47 -0.3
175,647 - HSERO_RS00845 0.82 +2.0
175,779 + +0.1
175,814 + +2.1
175,975 + +0.8
176,311 - HSERO_RS00850 0.20 -0.6
176,311 - HSERO_RS00850 0.20 +0.3
176,400 - HSERO_RS00850 0.24 +0.0
176,649 - HSERO_RS00850 0.36 +0.9
176,695 - HSERO_RS00850 0.38 -0.0

Or see this region's nucleotide sequence