Experiment: D-Maltose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04620 and HMPREF1058_RS04615 are separated by 95 nucleotides HMPREF1058_RS04615 and HMPREF1058_RS04610 are separated by 104 nucleotides HMPREF1058_RS04610 and HMPREF1058_RS21515 are separated by 55 nucleotides HMPREF1058_RS21515 and HMPREF1058_RS04605 overlap by 22 nucleotides
HMPREF1058_RS04620: HMPREF1058_RS04620 - hypothetical protein, at 1 to 215
_RS04620
HMPREF1058_RS04615: HMPREF1058_RS04615 - hypothetical protein, at 311 to 829
_RS04615
HMPREF1058_RS04610: HMPREF1058_RS04610 - ATP-binding protein, at 934 to 1,530
_RS04610
HMPREF1058_RS21515: HMPREF1058_RS21515 - hypothetical protein, at 1,586 to 2,380
_RS21515
HMPREF1058_RS04605: HMPREF1058_RS04605 - HNH endonuclease, at 2,359 to 2,856
_RS04605
Position (kb) 0
1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 0.191 kb on + strand, within HMPREF1058_RS04620 at 0.215 kb on + strand at 0.216 kb on - strand at 0.397 kb on + strand, within HMPREF1058_RS04615 at 0.398 kb on - strand at 0.406 kb on - strand, within HMPREF1058_RS04615 at 0.477 kb on + strand, within HMPREF1058_RS04615 at 0.531 kb on - strand, within HMPREF1058_RS04615 at 0.541 kb on + strand, within HMPREF1058_RS04615 at 0.647 kb on - strand, within HMPREF1058_RS04615 at 0.647 kb on - strand at 0.648 kb on + strand, within HMPREF1058_RS04615 at 0.664 kb on - strand, within HMPREF1058_RS04615 at 0.856 kb on - strand at 0.859 kb on + strand at 0.859 kb on + strand at 0.859 kb on + strand at 0.863 kb on + strand at 0.864 kb on - strand at 0.923 kb on + strand at 0.923 kb on + strand at 0.928 kb on + strand at 0.929 kb on - strand at 1.052 kb on + strand, within HMPREF1058_RS04610 at 1.053 kb on - strand, within HMPREF1058_RS04610 at 1.159 kb on + strand, within HMPREF1058_RS04610 at 1.160 kb on - strand, within HMPREF1058_RS04610 at 1.221 kb on - strand, within HMPREF1058_RS04610 at 1.226 kb on + strand, within HMPREF1058_RS04610 at 1.234 kb on + strand, within HMPREF1058_RS04610 at 1.234 kb on + strand, within HMPREF1058_RS04610 at 1.253 kb on + strand, within HMPREF1058_RS04610 at 1.446 kb on - strand, within HMPREF1058_RS04610 at 1.448 kb on + strand, within HMPREF1058_RS04610 at 1.602 kb on + strand at 1.631 kb on + strand at 1.631 kb on + strand at 1.631 kb on + strand at 1.665 kb on + strand at 1.736 kb on - strand, within HMPREF1058_RS21515 at 1.836 kb on + strand, within HMPREF1058_RS21515 at 1.884 kb on + strand, within HMPREF1058_RS21515 at 1.885 kb on - strand, within HMPREF1058_RS21515 at 1.885 kb on - strand, within HMPREF1058_RS21515 at 1.999 kb on + strand, within HMPREF1058_RS21515 at 2.024 kb on - strand, within HMPREF1058_RS21515 at 2.033 kb on + strand, within HMPREF1058_RS21515 at 2.034 kb on - strand, within HMPREF1058_RS21515 at 2.107 kb on + strand, within HMPREF1058_RS21515 at 2.161 kb on + strand, within HMPREF1058_RS21515 at 2.191 kb on - strand, within HMPREF1058_RS21515 at 2.336 kb on - strand at 2.394 kb on + strand at 2.529 kb on + strand, within HMPREF1058_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 20 mM (C) remove 191 + HMPREF1058_RS04620 0.88 -2.7 215 + -0.5 216 - +0.2 397 + HMPREF1058_RS04615 0.17 +1.6 398 - +0.6 406 - HMPREF1058_RS04615 0.18 -1.8 477 + HMPREF1058_RS04615 0.32 -0.1 531 - HMPREF1058_RS04615 0.42 -1.6 541 + HMPREF1058_RS04615 0.44 -0.6 647 - HMPREF1058_RS04615 0.65 -0.5 647 - +0.2 648 + HMPREF1058_RS04615 0.65 -1.1 664 - HMPREF1058_RS04615 0.68 -1.2 856 - -1.2 859 + +1.2 859 + +1.7 859 + -1.0 863 + +0.3 864 - -2.1 923 + -1.1 923 + -0.0 928 + -0.2 929 - -1.4 1,052 + HMPREF1058_RS04610 0.20 -1.7 1,053 - HMPREF1058_RS04610 0.20 -3.0 1,159 + HMPREF1058_RS04610 0.38 -1.4 1,160 - HMPREF1058_RS04610 0.38 -1.8 1,221 - HMPREF1058_RS04610 0.48 -2.0 1,226 + HMPREF1058_RS04610 0.49 -1.4 1,234 + HMPREF1058_RS04610 0.50 -1.3 1,234 + HMPREF1058_RS04610 0.50 -1.7 1,253 + HMPREF1058_RS04610 0.53 -0.6 1,446 - HMPREF1058_RS04610 0.86 -0.1 1,448 + HMPREF1058_RS04610 0.86 -1.3 1,602 + +1.0 1,631 + -1.4 1,631 + +0.2 1,631 + +0.9 1,665 + +0.2 1,736 - HMPREF1058_RS21515 0.19 -0.6 1,836 + HMPREF1058_RS21515 0.31 -0.4 1,884 + HMPREF1058_RS21515 0.37 +1.3 1,885 - HMPREF1058_RS21515 0.38 -1.4 1,885 - HMPREF1058_RS21515 0.38 -2.4 1,999 + HMPREF1058_RS21515 0.52 -0.5 2,024 - HMPREF1058_RS21515 0.55 -0.4 2,033 + HMPREF1058_RS21515 0.56 -0.8 2,034 - HMPREF1058_RS21515 0.56 -1.4 2,107 + HMPREF1058_RS21515 0.66 +0.1 2,161 + HMPREF1058_RS21515 0.72 +0.6 2,191 - HMPREF1058_RS21515 0.76 -1.8 2,336 - +0.9 2,394 + +0.6 2,529 + HMPREF1058_RS04605 0.34 +1.3
Or see this region's nucleotide sequence