Experiment: D-Maltose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01270 and HMPREF1058_RS01265 are separated by 4 nucleotides HMPREF1058_RS01265 and HMPREF1058_RS01260 are separated by 15 nucleotides HMPREF1058_RS01260 and HMPREF1058_RS01255 are separated by 118 nucleotides
HMPREF1058_RS01270: HMPREF1058_RS01270 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 167,136 to 167,645
_RS01270
HMPREF1058_RS01265: HMPREF1058_RS01265 - FHA domain-containing protein, at 167,650 to 168,174
_RS01265
HMPREF1058_RS01260: HMPREF1058_RS01260 - SPOR domain-containing protein, at 168,190 to 169,320
_RS01260
HMPREF1058_RS01255: HMPREF1058_RS01255 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 169,439 to 170,752
_RS01255
Position (kb) 168
169
170 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 167.196 kb on + strand, within HMPREF1058_RS01270 at 167.196 kb on + strand, within HMPREF1058_RS01270 at 167.200 kb on + strand, within HMPREF1058_RS01270 at 167.271 kb on + strand, within HMPREF1058_RS01270 at 167.272 kb on - strand, within HMPREF1058_RS01270 at 167.356 kb on - strand, within HMPREF1058_RS01270 at 167.387 kb on + strand, within HMPREF1058_RS01270 at 167.388 kb on - strand, within HMPREF1058_RS01270 at 167.394 kb on + strand, within HMPREF1058_RS01270 at 167.418 kb on + strand, within HMPREF1058_RS01270 at 167.418 kb on + strand, within HMPREF1058_RS01270 at 167.419 kb on - strand, within HMPREF1058_RS01270 at 167.419 kb on - strand, within HMPREF1058_RS01270 at 167.464 kb on - strand, within HMPREF1058_RS01270 at 167.464 kb on - strand, within HMPREF1058_RS01270 at 167.543 kb on + strand, within HMPREF1058_RS01270 at 167.544 kb on - strand, within HMPREF1058_RS01270 at 167.548 kb on - strand, within HMPREF1058_RS01270 at 167.552 kb on - strand, within HMPREF1058_RS01270 at 167.634 kb on - strand at 167.651 kb on + strand at 167.793 kb on - strand, within HMPREF1058_RS01265 at 167.832 kb on + strand, within HMPREF1058_RS01265 at 167.938 kb on + strand, within HMPREF1058_RS01265 at 167.939 kb on - strand, within HMPREF1058_RS01265 at 167.939 kb on - strand, within HMPREF1058_RS01265 at 167.948 kb on + strand, within HMPREF1058_RS01265 at 168.114 kb on + strand, within HMPREF1058_RS01265 at 168.117 kb on - strand, within HMPREF1058_RS01265 at 168.137 kb on - strand at 168.139 kb on - strand at 168.139 kb on - strand at 168.141 kb on - strand at 168.192 kb on - strand at 168.270 kb on + strand at 168.326 kb on - strand, within HMPREF1058_RS01260 at 168.357 kb on + strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.411 kb on - strand, within HMPREF1058_RS01260 at 168.528 kb on + strand, within HMPREF1058_RS01260 at 168.709 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.737 kb on + strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.779 kb on - strand, within HMPREF1058_RS01260 at 168.904 kb on + strand, within HMPREF1058_RS01260 at 168.927 kb on + strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.938 kb on - strand, within HMPREF1058_RS01260 at 168.980 kb on + strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.997 kb on - strand, within HMPREF1058_RS01260 at 169.003 kb on + strand, within HMPREF1058_RS01260 at 169.046 kb on - strand, within HMPREF1058_RS01260 at 169.078 kb on + strand, within HMPREF1058_RS01260 at 169.079 kb on - strand, within HMPREF1058_RS01260 at 169.151 kb on - strand, within HMPREF1058_RS01260 at 169.180 kb on - strand, within HMPREF1058_RS01260 at 169.180 kb on - strand, within HMPREF1058_RS01260 at 169.184 kb on - strand, within HMPREF1058_RS01260 at 169.243 kb on - strand at 169.300 kb on - strand at 169.340 kb on + strand at 169.515 kb on + strand at 169.530 kb on + strand at 169.568 kb on - strand at 169.574 kb on - strand, within HMPREF1058_RS01255 at 169.614 kb on + strand, within HMPREF1058_RS01255 at 169.615 kb on - strand, within HMPREF1058_RS01255 at 169.731 kb on - strand, within HMPREF1058_RS01255 at 169.763 kb on - strand, within HMPREF1058_RS01255 at 169.776 kb on - strand, within HMPREF1058_RS01255 at 169.915 kb on + strand, within HMPREF1058_RS01255 at 169.963 kb on - strand, within HMPREF1058_RS01255 at 170.070 kb on - strand, within HMPREF1058_RS01255 at 170.151 kb on + strand, within HMPREF1058_RS01255 at 170.152 kb on - strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 20 mM (C) remove 167,196 + HMPREF1058_RS01270 0.12 -1.5 167,196 + HMPREF1058_RS01270 0.12 -0.4 167,200 + HMPREF1058_RS01270 0.13 -2.2 167,271 + HMPREF1058_RS01270 0.26 -1.7 167,272 - HMPREF1058_RS01270 0.27 -1.4 167,356 - HMPREF1058_RS01270 0.43 -0.6 167,387 + HMPREF1058_RS01270 0.49 -1.7 167,388 - HMPREF1058_RS01270 0.49 -3.3 167,394 + HMPREF1058_RS01270 0.51 -2.3 167,418 + HMPREF1058_RS01270 0.55 -1.8 167,418 + HMPREF1058_RS01270 0.55 +0.0 167,419 - HMPREF1058_RS01270 0.55 -4.6 167,419 - HMPREF1058_RS01270 0.55 -2.7 167,464 - HMPREF1058_RS01270 0.64 -2.0 167,464 - HMPREF1058_RS01270 0.64 -1.6 167,543 + HMPREF1058_RS01270 0.80 +0.8 167,544 - HMPREF1058_RS01270 0.80 -2.0 167,548 - HMPREF1058_RS01270 0.81 -2.5 167,552 - HMPREF1058_RS01270 0.82 -0.5 167,634 - -1.7 167,651 + -1.7 167,793 - HMPREF1058_RS01265 0.27 -0.7 167,832 + HMPREF1058_RS01265 0.35 -0.5 167,938 + HMPREF1058_RS01265 0.55 +0.8 167,939 - HMPREF1058_RS01265 0.55 -0.8 167,939 - HMPREF1058_RS01265 0.55 +0.2 167,948 + HMPREF1058_RS01265 0.57 -1.1 168,114 + HMPREF1058_RS01265 0.88 -1.1 168,117 - HMPREF1058_RS01265 0.89 +1.3 168,137 - -0.3 168,139 - +0.1 168,139 - +0.6 168,141 - +1.9 168,192 - +0.9 168,270 + -0.7 168,326 - HMPREF1058_RS01260 0.12 -0.3 168,357 + HMPREF1058_RS01260 0.15 -1.2 168,408 - HMPREF1058_RS01260 0.19 -0.4 168,408 - HMPREF1058_RS01260 0.19 +0.5 168,408 - HMPREF1058_RS01260 0.19 -0.2 168,411 - HMPREF1058_RS01260 0.20 +1.3 168,528 + HMPREF1058_RS01260 0.30 -1.8 168,709 + HMPREF1058_RS01260 0.46 -1.8 168,723 + HMPREF1058_RS01260 0.47 -1.5 168,723 + HMPREF1058_RS01260 0.47 -2.7 168,737 + HMPREF1058_RS01260 0.48 +1.3 168,738 - HMPREF1058_RS01260 0.48 +0.9 168,738 - HMPREF1058_RS01260 0.48 -0.7 168,738 - HMPREF1058_RS01260 0.48 -1.5 168,779 - HMPREF1058_RS01260 0.52 -0.1 168,904 + HMPREF1058_RS01260 0.63 -1.7 168,927 + HMPREF1058_RS01260 0.65 -1.6 168,928 - HMPREF1058_RS01260 0.65 +0.1 168,928 - HMPREF1058_RS01260 0.65 +0.4 168,928 - HMPREF1058_RS01260 0.65 -0.7 168,938 - HMPREF1058_RS01260 0.66 -0.7 168,980 + HMPREF1058_RS01260 0.70 -2.3 168,981 - HMPREF1058_RS01260 0.70 -0.0 168,981 - HMPREF1058_RS01260 0.70 +1.1 168,997 - HMPREF1058_RS01260 0.71 +0.3 169,003 + HMPREF1058_RS01260 0.72 +0.8 169,046 - HMPREF1058_RS01260 0.76 -0.2 169,078 + HMPREF1058_RS01260 0.79 -1.7 169,079 - HMPREF1058_RS01260 0.79 -0.7 169,151 - HMPREF1058_RS01260 0.85 -1.1 169,180 - HMPREF1058_RS01260 0.88 -1.0 169,180 - HMPREF1058_RS01260 0.88 +0.8 169,184 - HMPREF1058_RS01260 0.88 -0.7 169,243 - +0.5 169,300 - -0.2 169,340 + -1.8 169,515 + -0.4 169,530 + -1.0 169,568 - -0.0 169,574 - HMPREF1058_RS01255 0.10 +1.3 169,614 + HMPREF1058_RS01255 0.13 -1.7 169,615 - HMPREF1058_RS01255 0.13 -0.7 169,731 - HMPREF1058_RS01255 0.22 +1.3 169,763 - HMPREF1058_RS01255 0.25 -2.1 169,776 - HMPREF1058_RS01255 0.26 +1.9 169,915 + HMPREF1058_RS01255 0.36 -1.7 169,963 - HMPREF1058_RS01255 0.40 -1.7 170,070 - HMPREF1058_RS01255 0.48 -0.7 170,151 + HMPREF1058_RS01255 0.54 -0.1 170,152 - HMPREF1058_RS01255 0.54 +1.3 170,155 + HMPREF1058_RS01255 0.54 -0.4 170,155 + HMPREF1058_RS01255 0.54 +0.2
Or see this region's nucleotide sequence