Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0476 and Ga0059261_0477 are separated by 106 nucleotides Ga0059261_0477 and Ga0059261_0478 overlap by 4 nucleotides Ga0059261_0478 and Ga0059261_0479 are separated by 122 nucleotides
Ga0059261_0476: Ga0059261_0476 - hypothetical protein, at 463,769 to 463,900
_0476
Ga0059261_0477: Ga0059261_0477 - RNA polymerase sigma factor, sigma-70 family, at 464,007 to 464,513
_0477
Ga0059261_0478: Ga0059261_0478 - FecR family protein, at 464,510 to 465,466
_0478
Ga0059261_0479: Ga0059261_0479 - TonB-dependent receptor, at 465,589 to 468,783
_0479
Position (kb) 464
465
466 Strain fitness (log2 ratio) -2
-1
0
1
2 at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.543 kb on + strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.544 kb on - strand at 463.546 kb on + strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.547 kb on - strand at 463.588 kb on + strand at 463.589 kb on - strand at 463.606 kb on + strand at 463.606 kb on + strand at 463.607 kb on - strand at 463.614 kb on + strand at 463.614 kb on + strand at 463.615 kb on - strand at 463.636 kb on + strand at 463.768 kb on + strand at 463.768 kb on + strand at 463.769 kb on - strand at 463.769 kb on - strand at 463.777 kb on + strand at 463.777 kb on + strand at 463.777 kb on + strand at 463.777 kb on + strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.778 kb on - strand at 463.898 kb on + strand at 463.898 kb on + strand at 463.898 kb on + strand at 463.911 kb on + strand at 463.930 kb on + strand at 463.930 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.965 kb on + strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 463.966 kb on - strand at 464.061 kb on + strand, within Ga0059261_0477 at 464.061 kb on + strand, within Ga0059261_0477 at 464.061 kb on + strand, within Ga0059261_0477 at 464.061 kb on + strand, within Ga0059261_0477 at 464.062 kb on - strand, within Ga0059261_0477 at 464.102 kb on + strand, within Ga0059261_0477 at 464.102 kb on + strand, within Ga0059261_0477 at 464.102 kb on + strand, within Ga0059261_0477 at 464.103 kb on - strand, within Ga0059261_0477 at 464.207 kb on + strand, within Ga0059261_0477 at 464.207 kb on + strand, within Ga0059261_0477 at 464.207 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.211 kb on + strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.212 kb on - strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.441 kb on + strand, within Ga0059261_0477 at 464.442 kb on - strand, within Ga0059261_0477 at 464.442 kb on - strand, within Ga0059261_0477 at 464.442 kb on - strand, within Ga0059261_0477 at 464.444 kb on + strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.445 kb on - strand, within Ga0059261_0477 at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.506 kb on + strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.507 kb on - strand at 464.559 kb on + strand at 464.559 kb on + strand at 464.559 kb on + strand at 464.566 kb on + strand at 464.566 kb on + strand at 464.567 kb on - strand at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.648 kb on + strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.649 kb on - strand, within Ga0059261_0478 at 464.667 kb on + strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.668 kb on - strand, within Ga0059261_0478 at 464.814 kb on + strand, within Ga0059261_0478 at 464.814 kb on + strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.815 kb on - strand, within Ga0059261_0478 at 464.855 kb on + strand, within Ga0059261_0478 at 464.856 kb on - strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.015 kb on + strand, within Ga0059261_0478 at 465.016 kb on - strand at 465.016 kb on - strand, within Ga0059261_0478 at 465.016 kb on - strand, within Ga0059261_0478 at 465.016 kb on - strand, within Ga0059261_0478 at 465.114 kb on - strand, within Ga0059261_0478 at 465.316 kb on - strand, within Ga0059261_0478 at 465.454 kb on - strand at 465.516 kb on - strand at 465.573 kb on + strand at 465.573 kb on + strand at 465.573 kb on + strand at 466.021 kb on + strand, within Ga0059261_0479 at 466.021 kb on + strand, within Ga0059261_0479 at 466.022 kb on - strand, within Ga0059261_0479 at 466.022 kb on - strand, within Ga0059261_0479 at 466.231 kb on + strand at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.231 kb on + strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.232 kb on - strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.285 kb on + strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.286 kb on - strand, within Ga0059261_0479 at 466.295 kb on + strand, within Ga0059261_0479 at 466.296 kb on - strand, within Ga0059261_0479 at 466.395 kb on + strand, within Ga0059261_0479 at 466.395 kb on + strand, within Ga0059261_0479 at 466.396 kb on - strand, within Ga0059261_0479 at 466.396 kb on - strand, within Ga0059261_0479 at 466.396 kb on - strand, within Ga0059261_0479 at 466.432 kb on + strand, within Ga0059261_0479 at 466.432 kb on + strand at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479 at 466.433 kb on - strand, within Ga0059261_0479
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM remove 463,543 + +0.1 463,543 + -0.0 463,543 + -0.0 463,543 + +0.0 463,543 + +0.0 463,543 + +1.0 463,543 + -0.2 463,543 + +0.1 463,544 - -0.9 463,544 - +1.4 463,544 - -0.7 463,544 - -1.4 463,544 - -1.2 463,544 - -0.6 463,546 + -1.7 463,547 - +0.5 463,547 - +0.4 463,547 - -0.4 463,547 - -0.4 463,547 - -1.3 463,588 + -0.2 463,589 - +0.2 463,606 + -0.1 463,606 + +1.7 463,607 - -0.8 463,614 + -0.8 463,614 + -0.2 463,615 - -1.0 463,636 + +0.3 463,768 + -0.4 463,768 + +0.8 463,769 - +0.3 463,769 - +0.3 463,777 + +0.4 463,777 + -1.4 463,777 + -0.2 463,777 + -0.4 463,778 - +0.6 463,778 - -0.0 463,778 - +0.9 463,778 - -0.5 463,778 - -0.3 463,778 - +0.0 463,898 + -0.6 463,898 + +1.0 463,898 + -0.0 463,911 + +0.7 463,930 + -0.1 463,930 + -0.4 463,965 + -0.2 463,965 + +0.3 463,965 + -0.4 463,965 + +0.3 463,965 + +0.7 463,965 + +0.8 463,965 + -0.7 463,965 + +0.1 463,965 + -0.2 463,966 - +0.4 463,966 - -0.4 463,966 - +0.2 463,966 - -0.9 463,966 - +0.3 463,966 - +2.0 464,061 + Ga0059261_0477 0.11 -1.1 464,061 + Ga0059261_0477 0.11 +0.4 464,061 + Ga0059261_0477 0.11 +0.5 464,061 + Ga0059261_0477 0.11 +1.9 464,062 - Ga0059261_0477 0.11 +0.1 464,102 + Ga0059261_0477 0.19 -0.5 464,102 + Ga0059261_0477 0.19 +0.7 464,102 + Ga0059261_0477 0.19 -0.1 464,103 - Ga0059261_0477 0.19 +0.3 464,207 + Ga0059261_0477 0.39 -0.6 464,207 + Ga0059261_0477 0.39 -0.2 464,207 + Ga0059261_0477 0.39 +1.4 464,211 + Ga0059261_0477 0.40 +0.0 464,211 + Ga0059261_0477 0.40 -0.6 464,211 + Ga0059261_0477 0.40 +1.2 464,211 + Ga0059261_0477 0.40 -0.0 464,211 + Ga0059261_0477 0.40 -0.3 464,211 + Ga0059261_0477 0.40 -0.3 464,212 - Ga0059261_0477 0.40 -0.6 464,212 - Ga0059261_0477 0.40 -0.1 464,212 - Ga0059261_0477 0.40 -0.8 464,212 - Ga0059261_0477 0.40 -1.5 464,212 - Ga0059261_0477 0.40 -1.1 464,441 + Ga0059261_0477 0.86 -1.1 464,441 + Ga0059261_0477 0.86 -1.2 464,441 + Ga0059261_0477 0.86 +0.1 464,441 + Ga0059261_0477 0.86 -1.1 464,441 + Ga0059261_0477 0.86 -0.4 464,441 + Ga0059261_0477 0.86 -0.2 464,441 + Ga0059261_0477 0.86 -0.7 464,441 + Ga0059261_0477 0.86 +0.7 464,441 + Ga0059261_0477 0.86 -0.9 464,442 - Ga0059261_0477 0.86 +0.1 464,442 - Ga0059261_0477 0.86 -0.1 464,442 - Ga0059261_0477 0.86 +1.4 464,444 + Ga0059261_0477 0.86 +0.4 464,445 - Ga0059261_0477 0.86 -0.1 464,445 - Ga0059261_0477 0.86 +0.1 464,445 - Ga0059261_0477 0.86 +0.8 464,445 - Ga0059261_0477 0.86 -0.6 464,506 + +0.0 464,506 + +1.0 464,506 + -0.5 464,506 + -0.0 464,506 + -0.2 464,506 + +0.6 464,506 + -0.3 464,507 - +0.4 464,507 - -0.7 464,507 - +0.2 464,507 - -0.3 464,507 - +0.4 464,559 + -0.4 464,559 + -1.5 464,559 + +0.8 464,566 + +0.1 464,566 + -1.1 464,567 - -0.2 464,648 + Ga0059261_0478 0.14 -0.1 464,648 + Ga0059261_0478 0.14 -1.1 464,648 + Ga0059261_0478 0.14 -0.1 464,648 + Ga0059261_0478 0.14 +0.4 464,648 + Ga0059261_0478 0.14 +0.2 464,648 + Ga0059261_0478 0.14 -0.3 464,648 + Ga0059261_0478 0.14 -1.5 464,648 + Ga0059261_0478 0.14 +0.5 464,649 - Ga0059261_0478 0.15 -0.2 464,649 - Ga0059261_0478 0.15 +0.5 464,649 - Ga0059261_0478 0.15 -0.4 464,649 - Ga0059261_0478 0.15 -0.6 464,649 - Ga0059261_0478 0.15 -0.6 464,667 + Ga0059261_0478 0.16 -0.9 464,668 - Ga0059261_0478 0.17 +0.5 464,668 - Ga0059261_0478 0.17 -0.5 464,668 - Ga0059261_0478 0.17 -0.9 464,668 - Ga0059261_0478 0.17 +0.3 464,668 - Ga0059261_0478 0.17 +0.3 464,814 + Ga0059261_0478 0.32 -0.7 464,814 + Ga0059261_0478 0.32 +0.4 464,815 - Ga0059261_0478 0.32 -0.4 464,815 - Ga0059261_0478 0.32 -0.0 464,815 - Ga0059261_0478 0.32 +0.1 464,815 - Ga0059261_0478 0.32 +0.0 464,855 + Ga0059261_0478 0.36 -1.3 464,856 - Ga0059261_0478 0.36 +0.6 465,015 + Ga0059261_0478 0.53 +0.5 465,015 + Ga0059261_0478 0.53 -1.9 465,015 + Ga0059261_0478 0.53 +0.1 465,015 + Ga0059261_0478 0.53 -0.1 465,016 - +1.5 465,016 - Ga0059261_0478 0.53 -1.4 465,016 - Ga0059261_0478 0.53 +0.7 465,016 - Ga0059261_0478 0.53 -0.2 465,114 - Ga0059261_0478 0.63 +0.9 465,316 - Ga0059261_0478 0.84 -2.0 465,454 - +0.0 465,516 - +0.4 465,573 + -0.4 465,573 + -1.4 465,573 + -0.1 466,021 + Ga0059261_0479 0.14 +0.1 466,021 + Ga0059261_0479 0.14 -0.1 466,022 - Ga0059261_0479 0.14 -0.6 466,022 - Ga0059261_0479 0.14 -0.3 466,231 + +1.1 466,231 + Ga0059261_0479 0.20 +0.5 466,231 + Ga0059261_0479 0.20 -0.1 466,231 + Ga0059261_0479 0.20 +0.7 466,231 + Ga0059261_0479 0.20 +1.5 466,231 + Ga0059261_0479 0.20 -0.9 466,231 + Ga0059261_0479 0.20 +0.1 466,231 + Ga0059261_0479 0.20 -1.5 466,232 - Ga0059261_0479 0.20 +1.0 466,232 - Ga0059261_0479 0.20 +1.2 466,232 - Ga0059261_0479 0.20 -2.5 466,232 - Ga0059261_0479 0.20 +1.0 466,285 + Ga0059261_0479 0.22 -0.5 466,285 + Ga0059261_0479 0.22 -0.7 466,285 + Ga0059261_0479 0.22 -0.4 466,285 + Ga0059261_0479 0.22 +0.2 466,286 - Ga0059261_0479 0.22 +0.1 466,286 - Ga0059261_0479 0.22 -0.1 466,286 - Ga0059261_0479 0.22 -0.1 466,286 - Ga0059261_0479 0.22 +1.5 466,295 + Ga0059261_0479 0.22 +1.5 466,296 - Ga0059261_0479 0.22 +0.5 466,395 + Ga0059261_0479 0.25 +0.7 466,395 + Ga0059261_0479 0.25 -0.7 466,396 - Ga0059261_0479 0.25 -0.9 466,396 - Ga0059261_0479 0.25 -1.1 466,396 - Ga0059261_0479 0.25 -0.5 466,432 + Ga0059261_0479 0.26 -0.4 466,432 + +0.9 466,433 - Ga0059261_0479 0.26 +1.5 466,433 - Ga0059261_0479 0.26 +0.5 466,433 - Ga0059261_0479 0.26 +0.1 466,433 - Ga0059261_0479 0.26 -1.0 466,433 - Ga0059261_0479 0.26 -0.1
Or see this region's nucleotide sequence