Experiment: 1-ethyl-3-methylimidazolium acetate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0172 and Ga0059261_0173 overlap by 4 nucleotides Ga0059261_0173 and Ga0059261_0174 overlap by 4 nucleotides Ga0059261_0174 and Ga0059261_0175 overlap by 4 nucleotides Ga0059261_0175 and Ga0059261_0176 are separated by 76 nucleotides Ga0059261_0176 and Ga0059261_0177 are separated by 127 nucleotides Ga0059261_0177 and Ga0059261_0178 are separated by 115 nucleotides
Ga0059261_0172: Ga0059261_0172 - Cytochrome c biogenesis factor, at 157,795 to 159,729
_0172
Ga0059261_0173: Ga0059261_0173 - Cytochrome c-type biogenesis protein CcmE, at 159,726 to 160,160
_0173
Ga0059261_0174: Ga0059261_0174 - hypothetical protein, at 160,157 to 160,288
_0174
Ga0059261_0175: Ga0059261_0175 - heme exporter protein CcmC, at 160,285 to 161,001
_0175
Ga0059261_0176: Ga0059261_0176 - PilZ domain, at 161,078 to 161,335
_0176
Ga0059261_0177: Ga0059261_0177 - ribosomal protein L31, at 161,463 to 161,693
_0177
Ga0059261_0178: Ga0059261_0178 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-), at 161,809 to 162,291
_0178
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 159.321 kb on - strand, within Ga0059261_0172 at 159.321 kb on - strand, within Ga0059261_0172 at 159.436 kb on + strand, within Ga0059261_0172 at 159.437 kb on - strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.482 kb on + strand, within Ga0059261_0172 at 159.483 kb on - strand, within Ga0059261_0172 at 159.782 kb on - strand, within Ga0059261_0173 at 159.782 kb on - strand, within Ga0059261_0173 at 160.052 kb on - strand, within Ga0059261_0173 at 160.198 kb on + strand, within Ga0059261_0174 at 160.199 kb on - strand, within Ga0059261_0174 at 160.257 kb on + strand, within Ga0059261_0174 at 160.258 kb on - strand, within Ga0059261_0174 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.408 kb on + strand, within Ga0059261_0175 at 160.539 kb on + strand, within Ga0059261_0175 at 160.540 kb on - strand at 160.540 kb on - strand, within Ga0059261_0175 at 160.540 kb on - strand, within Ga0059261_0175 at 160.593 kb on + strand, within Ga0059261_0175 at 160.594 kb on - strand at 160.594 kb on - strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand at 160.595 kb on + strand, within Ga0059261_0175 at 160.595 kb on + strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.596 kb on - strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand, within Ga0059261_0175 at 160.769 kb on + strand at 160.770 kb on - strand, within Ga0059261_0175 at 160.837 kb on - strand, within Ga0059261_0175 at 160.837 kb on - strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand at 160.838 kb on + strand at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.838 kb on + strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.839 kb on - strand, within Ga0059261_0175 at 160.868 kb on + strand, within Ga0059261_0175 at 160.868 kb on + strand, within Ga0059261_0175 at 160.869 kb on - strand, within Ga0059261_0175 at 160.966 kb on + strand at 160.966 kb on + strand at 160.966 kb on + strand at 161.019 kb on - strand at 161.019 kb on - strand at 161.415 kb on + strand at 161.415 kb on + strand at 161.415 kb on + strand at 161.415 kb on + strand at 161.416 kb on - strand at 161.416 kb on - strand at 161.465 kb on - strand at 161.804 kb on + strand at 161.804 kb on + strand at 161.805 kb on - strand at 161.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 5 mM remove 159,321 - Ga0059261_0172 0.79 -2.3 159,321 - Ga0059261_0172 0.79 -1.3 159,436 + Ga0059261_0172 0.85 +0.3 159,437 - Ga0059261_0172 0.85 -1.5 159,482 + Ga0059261_0172 0.87 -3.1 159,482 + Ga0059261_0172 0.87 -0.7 159,483 - Ga0059261_0172 0.87 -1.7 159,782 - Ga0059261_0173 0.13 -1.3 159,782 - Ga0059261_0173 0.13 -1.5 160,052 - Ga0059261_0173 0.75 -1.3 160,198 + Ga0059261_0174 0.31 -0.5 160,199 - Ga0059261_0174 0.32 -0.2 160,257 + Ga0059261_0174 0.76 -0.7 160,258 - Ga0059261_0174 0.77 -2.2 160,408 + Ga0059261_0175 0.17 -2.0 160,408 + Ga0059261_0175 0.17 -2.8 160,408 + Ga0059261_0175 0.17 -1.3 160,408 + Ga0059261_0175 0.17 -1.8 160,539 + Ga0059261_0175 0.35 -0.3 160,540 - -1.3 160,540 - Ga0059261_0175 0.36 -0.3 160,540 - Ga0059261_0175 0.36 -1.5 160,593 + Ga0059261_0175 0.43 -0.5 160,594 - -0.3 160,594 - Ga0059261_0175 0.43 -1.1 160,595 + Ga0059261_0175 0.43 -2.1 160,595 + -0.3 160,595 + Ga0059261_0175 0.43 -1.3 160,595 + Ga0059261_0175 0.43 -1.3 160,596 - Ga0059261_0175 0.43 -1.5 160,596 - Ga0059261_0175 0.43 -1.5 160,596 - Ga0059261_0175 0.43 -2.5 160,769 + Ga0059261_0175 0.68 +0.3 160,769 + +0.3 160,769 + Ga0059261_0175 0.68 -1.7 160,769 + Ga0059261_0175 0.68 -1.4 160,769 + Ga0059261_0175 0.68 -2.0 160,769 + Ga0059261_0175 0.68 -2.4 160,769 + Ga0059261_0175 0.68 -1.3 160,769 + Ga0059261_0175 0.68 -2.3 160,769 + -1.0 160,770 - Ga0059261_0175 0.68 -1.5 160,837 - Ga0059261_0175 0.77 -2.1 160,837 - Ga0059261_0175 0.77 -2.3 160,838 + Ga0059261_0175 0.77 +0.6 160,838 + +1.3 160,838 + +0.7 160,838 + Ga0059261_0175 0.77 -2.3 160,838 + Ga0059261_0175 0.77 -1.3 160,838 + Ga0059261_0175 0.77 -2.1 160,838 + Ga0059261_0175 0.77 -2.5 160,839 - Ga0059261_0175 0.77 -3.0 160,839 - Ga0059261_0175 0.77 -2.5 160,839 - Ga0059261_0175 0.77 -0.5 160,839 - Ga0059261_0175 0.77 -0.3 160,839 - Ga0059261_0175 0.77 -0.3 160,839 - Ga0059261_0175 0.77 -1.7 160,839 - -0.3 160,839 - Ga0059261_0175 0.77 -1.2 160,839 - Ga0059261_0175 0.77 -0.3 160,839 - Ga0059261_0175 0.77 -1.0 160,839 - Ga0059261_0175 0.77 -2.4 160,839 - Ga0059261_0175 0.77 -3.3 160,868 + Ga0059261_0175 0.81 -1.8 160,868 + Ga0059261_0175 0.81 -2.0 160,869 - Ga0059261_0175 0.81 -1.3 160,966 + -1.1 160,966 + +0.9 160,966 + -0.7 161,019 - -0.7 161,019 - +0.8 161,415 + +1.3 161,415 + +0.7 161,415 + +0.4 161,415 + -1.8 161,416 - -1.2 161,416 - +0.3 161,465 - -0.3 161,804 + +1.1 161,804 + -1.0 161,805 - +0.3 161,805 - +0.1
Or see this region's nucleotide sequence