Experiment: R2A with sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21175 and CA265_RS21180 are separated by 47 nucleotides CA265_RS21180 and CA265_RS21185 are separated by 450 nucleotides
CA265_RS21175: CA265_RS21175 - sodium:proton antiporter, at 5,213,028 to 5,214,260
_RS21175
CA265_RS21180: CA265_RS21180 - quinolinate synthase, at 5,214,308 to 5,215,306
_RS21180
CA265_RS21185: CA265_RS21185 - L-aspartate oxidase, at 5,215,757 to 5,217,343
_RS21185
Position (kb)
5214
5215
5216 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5213.336 kb on + strand, within CA265_RS21175 at 5213.337 kb on - strand, within CA265_RS21175 at 5213.360 kb on + strand, within CA265_RS21175 at 5213.396 kb on + strand, within CA265_RS21175 at 5213.457 kb on - strand, within CA265_RS21175 at 5213.495 kb on + strand, within CA265_RS21175 at 5213.573 kb on - strand, within CA265_RS21175 at 5213.591 kb on - strand, within CA265_RS21175 at 5213.591 kb on - strand, within CA265_RS21175 at 5213.614 kb on + strand, within CA265_RS21175 at 5213.748 kb on - strand, within CA265_RS21175 at 5213.794 kb on - strand, within CA265_RS21175 at 5213.823 kb on - strand, within CA265_RS21175 at 5213.996 kb on + strand, within CA265_RS21175 at 5213.997 kb on - strand, within CA265_RS21175 at 5214.027 kb on + strand, within CA265_RS21175 at 5214.027 kb on + strand, within CA265_RS21175 at 5214.087 kb on + strand, within CA265_RS21175 at 5214.127 kb on - strand, within CA265_RS21175 at 5214.182 kb on + strand at 5214.183 kb on - strand at 5214.196 kb on - strand at 5214.213 kb on + strand at 5214.216 kb on + strand at 5214.226 kb on + strand at 5214.259 kb on - strand at 5214.417 kb on - strand, within CA265_RS21180 at 5214.618 kb on + strand, within CA265_RS21180 at 5215.038 kb on - strand, within CA265_RS21180 at 5215.174 kb on - strand, within CA265_RS21180 at 5215.349 kb on - strand at 5215.369 kb on - strand at 5215.752 kb on + strand at 5215.940 kb on - strand, within CA265_RS21185 at 5216.047 kb on - strand, within CA265_RS21185 at 5216.190 kb on + strand, within CA265_RS21185 at 5216.191 kb on - strand, within CA265_RS21185 at 5216.273 kb on - strand, within CA265_RS21185 at 5216.282 kb on + strand, within CA265_RS21185 at 5216.292 kb on - strand, within CA265_RS21185
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium fluoride 25 mM remove 5,213,336 + CA265_RS21175 0.25 -0.2 5,213,337 - CA265_RS21175 0.25 +0.6 5,213,360 + CA265_RS21175 0.27 -0.3 5,213,396 + CA265_RS21175 0.30 -1.3 5,213,457 - CA265_RS21175 0.35 -0.1 5,213,495 + CA265_RS21175 0.38 -1.1 5,213,573 - CA265_RS21175 0.44 +0.5 5,213,591 - CA265_RS21175 0.46 -0.6 5,213,591 - CA265_RS21175 0.46 +0.3 5,213,614 + CA265_RS21175 0.48 -1.8 5,213,748 - CA265_RS21175 0.58 -1.6 5,213,794 - CA265_RS21175 0.62 -0.1 5,213,823 - CA265_RS21175 0.64 -0.6 5,213,996 + CA265_RS21175 0.79 -0.9 5,213,997 - CA265_RS21175 0.79 +0.2 5,214,027 + CA265_RS21175 0.81 +0.3 5,214,027 + CA265_RS21175 0.81 +1.3 5,214,087 + CA265_RS21175 0.86 -1.5 5,214,127 - CA265_RS21175 0.89 -0.5 5,214,182 + -1.6 5,214,183 - +0.1 5,214,196 - -0.1 5,214,213 + +0.1 5,214,216 + +0.6 5,214,226 + -0.5 5,214,259 - -1.9 5,214,417 - CA265_RS21180 0.11 +0.5 5,214,618 + CA265_RS21180 0.31 -0.4 5,215,038 - CA265_RS21180 0.73 +0.3 5,215,174 - CA265_RS21180 0.87 +1.0 5,215,349 - +0.1 5,215,369 - +1.0 5,215,752 + +1.9 5,215,940 - CA265_RS21185 0.12 -0.8 5,216,047 - CA265_RS21185 0.18 +1.7 5,216,190 + CA265_RS21185 0.27 -0.7 5,216,191 - CA265_RS21185 0.27 -0.6 5,216,273 - CA265_RS21185 0.33 -0.7 5,216,282 + CA265_RS21185 0.33 +0.6 5,216,292 - CA265_RS21185 0.34 +0.0
Or see this region's nucleotide sequence