Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21180

Experiment: R2A with sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21175 and CA265_RS21180 are separated by 47 nucleotidesCA265_RS21180 and CA265_RS21185 are separated by 450 nucleotides CA265_RS21175: CA265_RS21175 - sodium:proton antiporter, at 5,213,028 to 5,214,260 _RS21175 CA265_RS21180: CA265_RS21180 - quinolinate synthase, at 5,214,308 to 5,215,306 _RS21180 CA265_RS21185: CA265_RS21185 - L-aspartate oxidase, at 5,215,757 to 5,217,343 _RS21185 Position (kb) 5214 5215 5216Strain fitness (log2 ratio) -2 -1 0 1 2at 5213.336 kb on + strand, within CA265_RS21175at 5213.337 kb on - strand, within CA265_RS21175at 5213.360 kb on + strand, within CA265_RS21175at 5213.396 kb on + strand, within CA265_RS21175at 5213.457 kb on - strand, within CA265_RS21175at 5213.495 kb on + strand, within CA265_RS21175at 5213.573 kb on - strand, within CA265_RS21175at 5213.591 kb on - strand, within CA265_RS21175at 5213.591 kb on - strand, within CA265_RS21175at 5213.614 kb on + strand, within CA265_RS21175at 5213.748 kb on - strand, within CA265_RS21175at 5213.794 kb on - strand, within CA265_RS21175at 5213.823 kb on - strand, within CA265_RS21175at 5213.996 kb on + strand, within CA265_RS21175at 5213.997 kb on - strand, within CA265_RS21175at 5214.027 kb on + strand, within CA265_RS21175at 5214.027 kb on + strand, within CA265_RS21175at 5214.087 kb on + strand, within CA265_RS21175at 5214.127 kb on - strand, within CA265_RS21175at 5214.182 kb on + strandat 5214.183 kb on - strandat 5214.196 kb on - strandat 5214.213 kb on + strandat 5214.216 kb on + strandat 5214.226 kb on + strandat 5214.259 kb on - strandat 5214.417 kb on - strand, within CA265_RS21180at 5214.618 kb on + strand, within CA265_RS21180at 5215.038 kb on - strand, within CA265_RS21180at 5215.174 kb on - strand, within CA265_RS21180at 5215.349 kb on - strandat 5215.369 kb on - strandat 5215.752 kb on + strandat 5215.940 kb on - strand, within CA265_RS21185at 5216.047 kb on - strand, within CA265_RS21185at 5216.190 kb on + strand, within CA265_RS21185at 5216.191 kb on - strand, within CA265_RS21185at 5216.273 kb on - strand, within CA265_RS21185at 5216.282 kb on + strand, within CA265_RS21185at 5216.292 kb on - strand, within CA265_RS21185

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium fluoride 25 mM
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5,213,336 + CA265_RS21175 0.25 -0.2
5,213,337 - CA265_RS21175 0.25 +0.6
5,213,360 + CA265_RS21175 0.27 -0.3
5,213,396 + CA265_RS21175 0.30 -1.3
5,213,457 - CA265_RS21175 0.35 -0.1
5,213,495 + CA265_RS21175 0.38 -1.1
5,213,573 - CA265_RS21175 0.44 +0.5
5,213,591 - CA265_RS21175 0.46 -0.6
5,213,591 - CA265_RS21175 0.46 +0.3
5,213,614 + CA265_RS21175 0.48 -1.8
5,213,748 - CA265_RS21175 0.58 -1.6
5,213,794 - CA265_RS21175 0.62 -0.1
5,213,823 - CA265_RS21175 0.64 -0.6
5,213,996 + CA265_RS21175 0.79 -0.9
5,213,997 - CA265_RS21175 0.79 +0.2
5,214,027 + CA265_RS21175 0.81 +0.3
5,214,027 + CA265_RS21175 0.81 +1.3
5,214,087 + CA265_RS21175 0.86 -1.5
5,214,127 - CA265_RS21175 0.89 -0.5
5,214,182 + -1.6
5,214,183 - +0.1
5,214,196 - -0.1
5,214,213 + +0.1
5,214,216 + +0.6
5,214,226 + -0.5
5,214,259 - -1.9
5,214,417 - CA265_RS21180 0.11 +0.5
5,214,618 + CA265_RS21180 0.31 -0.4
5,215,038 - CA265_RS21180 0.73 +0.3
5,215,174 - CA265_RS21180 0.87 +1.0
5,215,349 - +0.1
5,215,369 - +1.0
5,215,752 + +1.9
5,215,940 - CA265_RS21185 0.12 -0.8
5,216,047 - CA265_RS21185 0.18 +1.7
5,216,190 + CA265_RS21185 0.27 -0.7
5,216,191 - CA265_RS21185 0.27 -0.6
5,216,273 - CA265_RS21185 0.33 -0.7
5,216,282 + CA265_RS21185 0.33 +0.6
5,216,292 - CA265_RS21185 0.34 +0.0

Or see this region's nucleotide sequence