Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09455

Experiment: R2A with sodium fluoride 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sodium fluoride 25 mM
2,342,857	-		CA265_RS09450	0.86	+0.1
2,342,877	+		CA265_RS09450	0.87	+0.5
2,342,959	-				-0.3
2,343,008	-				-0.3
2,343,032	+				+0.2
2,343,036	+				-0.2
2,343,037	-				+0.4
2,343,079	+				+0.0
2,343,126	-				+0.7
2,343,176	-				+0.3
2,343,214	-				-0.3
2,343,214	-				-0.3
2,343,371	+				-1.2
2,343,373	+				-1.4
2,343,373	+				-0.1
2,343,373	+				-0.2
2,343,374	-				+0.4
2,343,374	-				-1.8
2,343,374	-				-0.0
2,343,374	-				+0.5
2,343,374	-				-0.1
2,343,375	+				+0.2
2,343,376	-				+0.7
2,343,377	+				-0.4
2,343,378	-				+1.5
2,343,383	+				-0.5
2,343,496	-				-0.7
2,343,506	-				+0.4
2,343,508	-				-0.8
2,343,512	+				+0.3
2,343,657	-				+0.1
2,343,831	+				+1.7
2,343,833	+				+2.8
2,343,833	+				+1.6
2,343,929	+				+0.6
2,343,953	+				+0.9
2,343,954	-				+0.8
2,343,963	-				+0.9
2,343,969	+				+0.8
2,343,977	+				+0.6
2,343,978	-				+1.0
2,344,019	+				+0.7
2,344,019	+				+1.4
2,344,020	-				+1.0
2,344,023	+		CA265_RS09455	0.10	+0.3
2,344,056	-		CA265_RS09455	0.12	+0.7
2,344,065	-		CA265_RS09455	0.12	+0.7
2,344,138	+		CA265_RS09455	0.15	+2.2
2,344,139	-		CA265_RS09455	0.15	+2.0
2,344,178	+		CA265_RS09455	0.17	+1.0
2,344,179	-		CA265_RS09455	0.17	+0.4
2,344,224	-		CA265_RS09455	0.19	+0.9
2,344,224	-		CA265_RS09455	0.19	+0.9
2,344,229	+		CA265_RS09455	0.20	+1.1
2,344,230	-		CA265_RS09455	0.20	+1.3
2,344,275	-		CA265_RS09455	0.22	+0.3
2,344,295	+		CA265_RS09455	0.23	+1.0
2,344,358	+		CA265_RS09455	0.26	+0.2
2,344,379	-		CA265_RS09455	0.27	+0.3
2,344,402	-		CA265_RS09455	0.28	+1.2
2,344,408	+		CA265_RS09455	0.28	+0.5
2,344,421	+		CA265_RS09455	0.29	+1.3
2,344,469	+		CA265_RS09455	0.31	-0.3
2,344,469	+		CA265_RS09455	0.31	+1.0
2,344,477	-		CA265_RS09455	0.31	+1.5
2,344,532	+		CA265_RS09455	0.34	+1.0
2,344,532	+		CA265_RS09455	0.34	+1.1
2,344,532	+		CA265_RS09455	0.34	+0.4
2,344,573	-		CA265_RS09455	0.36	+1.1
2,344,577	-		CA265_RS09455	0.36	+1.0
2,344,579	+		CA265_RS09455	0.36	+0.7
2,344,581	+		CA265_RS09455	0.36	+1.5
2,344,582	-		CA265_RS09455	0.36	+1.5
2,344,622	+		CA265_RS09455	0.38	+0.9
2,344,626	-		CA265_RS09455	0.38	+0.5
2,344,793	-		CA265_RS09455	0.46	+0.8
2,344,798	-		CA265_RS09455	0.46	+1.2
2,344,810	-		CA265_RS09455	0.47	+0.9
2,344,810	-		CA265_RS09455	0.47	+0.6
2,344,810	-		CA265_RS09455	0.47	+0.9
2,344,847	+		CA265_RS09455	0.48	+0.3
2,344,984	+		CA265_RS09455	0.55	+0.4
2,344,984	+		CA265_RS09455	0.55	+0.4
2,344,996	-		CA265_RS09455	0.55	+0.7
2,345,033	+		CA265_RS09455	0.57	+0.9
2,345,045	+		CA265_RS09455	0.57	+1.1
2,345,073	+		CA265_RS09455	0.59	+1.3
2,345,077	+		CA265_RS09455	0.59	+0.6
2,345,077	+				+0.1
2,345,087	+		CA265_RS09455	0.59	+0.7
2,345,144	-		CA265_RS09455	0.62	+2.1
2,345,200	+		CA265_RS09455	0.65	+0.9
2,345,200	+		CA265_RS09455	0.65	+0.3
2,345,234	+		CA265_RS09455	0.66	+1.0
2,345,249	+		CA265_RS09455	0.67	+1.0
2,345,250	-		CA265_RS09455	0.67	+0.8
2,345,294	+		CA265_RS09455	0.69	+1.1
2,345,308	+		CA265_RS09455	0.70	+1.1
2,345,310	+		CA265_RS09455	0.70	+1.2
2,345,310	+		CA265_RS09455	0.70	+0.7
2,345,311	-		CA265_RS09455	0.70	+2.5
2,345,315	+		CA265_RS09455	0.70	+1.8
2,345,316	-		CA265_RS09455	0.70	+0.6
2,345,372	-		CA265_RS09455	0.73	-0.1
2,345,376	+		CA265_RS09455	0.73	+0.7
2,345,383	-		CA265_RS09455	0.73	+0.8
2,345,385	-		CA265_RS09455	0.73	+0.9
2,345,414	-		CA265_RS09455	0.74	+2.8
2,345,532	+		CA265_RS09455	0.80	+1.2
2,345,542	+		CA265_RS09455	0.80	+1.2
2,345,545	-		CA265_RS09455	0.81	+1.1
2,345,566	+		CA265_RS09455	0.82	+2.1
2,345,567	-		CA265_RS09455	0.82	+0.4
2,345,570	+		CA265_RS09455	0.82	+1.1
2,345,570	+		CA265_RS09455	0.82	+1.4
2,345,571	-		CA265_RS09455	0.82	+0.4
2,345,571	-		CA265_RS09455	0.82	+1.5
2,345,686	+		CA265_RS09455	0.87	-0.8
2,345,687	-		CA265_RS09455	0.87	+0.7
2,345,712	+		CA265_RS09455	0.88	+0.8
2,345,713	-		CA265_RS09455	0.88	+0.1
2,345,767	-				+0.8
2,345,777	-				+0.8
2,345,787	+				+1.5
2,345,794	-				+3.1
2,345,829	+				+1.1
2,345,849	+				+0.9
2,345,864	+				+0.5
2,345,931	+				+0.6
2,345,942	+				+0.2
2,345,962	+				-0.3
2,345,963	-				+0.6
2,346,035	-				+0.2
2,346,036	+				-0.1
2,346,037	-				+0.6
2,346,054	+				-1.1
2,346,091	-		CA265_RS09460	0.10	+1.1
2,346,225	-		CA265_RS09460	0.24	+0.3
2,346,269	-		CA265_RS09460	0.28	+0.3
2,346,270	+		CA265_RS09460	0.28	+0.5
2,346,323	+		CA265_RS09460	0.34	-0.6
2,346,323	+		CA265_RS09460	0.34	-0.3
2,346,460	+		CA265_RS09460	0.47	+0.1
2,346,460	+		CA265_RS09460	0.47	-0.2
2,346,504	+		CA265_RS09460	0.52	+0.9
2,346,505	-		CA265_RS09460	0.52	-0.7
2,346,505	-		CA265_RS09460	0.52	-0.2
2,346,544	-		CA265_RS09460	0.56	+0.3
2,346,570	+		CA265_RS09460	0.58	+0.6
2,346,575	+		CA265_RS09460	0.59	+0.1
2,346,580	-		CA265_RS09460	0.59	+0.1
2,346,592	-		CA265_RS09460	0.61	-0.4
2,346,642	+		CA265_RS09460	0.66	+0.1
2,346,643	-		CA265_RS09460	0.66	+0.1
2,346,643	-		CA265_RS09460	0.66	+0.7
2,346,649	-		CA265_RS09460	0.66	-0.7
2,346,651	+		CA265_RS09460	0.66	-0.9
2,346,651	+		CA265_RS09460	0.66	+1.5
2,346,651	+		CA265_RS09460	0.66	-0.8
2,346,673	-		CA265_RS09460	0.69	+0.1
2,346,691	+		CA265_RS09460	0.70	-0.2
2,346,719	+		CA265_RS09460	0.73	+0.0
2,346,736	-		CA265_RS09460	0.75	+0.0
2,346,793	+		CA265_RS09460	0.81	-0.2
2,346,796	+		CA265_RS09460	0.81	-0.5
2,346,797	-		CA265_RS09460	0.81	-0.3
2,346,798	+		CA265_RS09460	0.81	-0.1
2,346,941	+				+0.1
2,346,942	-				-0.0
2,346,942	-				+0.3
2,346,942	-				+0.4
2,346,946	+				-0.6