Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07115

Experiment: R2A with sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS07105 and CA265_RS07110 are separated by 48 nucleotidesCA265_RS07110 and CA265_RS07115 are separated by 95 nucleotidesCA265_RS07115 and CA265_RS07120 are separated by 545 nucleotides CA265_RS07105: CA265_RS07105 - AAA family ATPase, at 1,773,840 to 1,774,994 _RS07105 CA265_RS07110: CA265_RS07110 - hypothetical protein, at 1,775,043 to 1,775,447 _RS07110 CA265_RS07115: CA265_RS07115 - DNA topoisomerase I, at 1,775,543 to 1,778,104 _RS07115 CA265_RS07120: CA265_RS07120 - glutathione peroxidase, at 1,778,650 to 1,779,162 _RS07120 Position (kb) 1775 1776 1777 1778 1779Strain fitness (log2 ratio) -2 -1 0 1at 1774.583 kb on - strand, within CA265_RS07105at 1774.587 kb on - strand, within CA265_RS07105at 1774.633 kb on + strand, within CA265_RS07105at 1774.703 kb on + strand, within CA265_RS07105at 1774.706 kb on + strand, within CA265_RS07105at 1774.754 kb on - strand, within CA265_RS07105at 1774.775 kb on - strand, within CA265_RS07105at 1774.811 kb on + strand, within CA265_RS07105at 1774.916 kb on - strandat 1774.919 kb on - strandat 1774.919 kb on - strandat 1774.950 kb on - strandat 1774.953 kb on - strandat 1774.961 kb on + strandat 1774.962 kb on - strandat 1774.965 kb on + strandat 1774.999 kb on - strandat 1775.032 kb on - strandat 1775.032 kb on - strandat 1775.044 kb on + strandat 1775.049 kb on - strandat 1775.071 kb on - strandat 1775.155 kb on + strand, within CA265_RS07110at 1775.158 kb on + strand, within CA265_RS07110at 1775.159 kb on - strand, within CA265_RS07110at 1775.159 kb on - strand, within CA265_RS07110at 1775.159 kb on - strand, within CA265_RS07110at 1775.304 kb on - strand, within CA265_RS07110at 1775.346 kb on - strand, within CA265_RS07110at 1775.394 kb on + strand, within CA265_RS07110at 1775.395 kb on - strand, within CA265_RS07110at 1775.395 kb on - strand, within CA265_RS07110at 1775.634 kb on - strandat 1775.688 kb on + strandat 1775.688 kb on + strandat 1775.689 kb on - strandat 1778.134 kb on - strandat 1778.347 kb on - strandat 1778.360 kb on + strandat 1778.375 kb on - strandat 1778.425 kb on + strandat 1778.575 kb on + strandat 1778.623 kb on + strandat 1778.631 kb on + strandat 1778.631 kb on + strandat 1778.636 kb on - strandat 1778.641 kb on - strandat 1778.681 kb on + strandat 1778.682 kb on - strandat 1778.868 kb on - strand, within CA265_RS07120at 1778.911 kb on - strand, within CA265_RS07120at 1778.950 kb on - strand, within CA265_RS07120at 1778.997 kb on + strand, within CA265_RS07120at 1779.008 kb on + strand, within CA265_RS07120at 1779.008 kb on + strand, within CA265_RS07120

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium fluoride 25 mM
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1,774,583 - CA265_RS07105 0.64 -0.1
1,774,587 - CA265_RS07105 0.65 -0.2
1,774,633 + CA265_RS07105 0.69 -1.0
1,774,703 + CA265_RS07105 0.75 -0.1
1,774,706 + CA265_RS07105 0.75 -0.5
1,774,754 - CA265_RS07105 0.79 -0.2
1,774,775 - CA265_RS07105 0.81 -0.0
1,774,811 + CA265_RS07105 0.84 -0.2
1,774,916 - +0.4
1,774,919 - -0.4
1,774,919 - -0.6
1,774,950 - +0.1
1,774,953 - +0.1
1,774,961 + +1.5
1,774,962 - +0.9
1,774,965 + +0.6
1,774,999 - -0.2
1,775,032 - +1.5
1,775,032 - +1.7
1,775,044 + -1.3
1,775,049 - -0.1
1,775,071 - +0.4
1,775,155 + CA265_RS07110 0.28 -0.5
1,775,158 + CA265_RS07110 0.28 +0.4
1,775,159 - CA265_RS07110 0.29 +0.1
1,775,159 - CA265_RS07110 0.29 +0.2
1,775,159 - CA265_RS07110 0.29 +0.7
1,775,304 - CA265_RS07110 0.64 -0.6
1,775,346 - CA265_RS07110 0.75 +0.4
1,775,394 + CA265_RS07110 0.87 -1.1
1,775,395 - CA265_RS07110 0.87 +0.3
1,775,395 - CA265_RS07110 0.87 +1.2
1,775,634 - -1.1
1,775,688 + +0.9
1,775,688 + -1.9
1,775,689 - -1.4
1,778,134 - -1.3
1,778,347 - +1.3
1,778,360 + -0.3
1,778,375 - +0.2
1,778,425 + -0.2
1,778,575 + +0.0
1,778,623 + +0.2
1,778,631 + -0.5
1,778,631 + +0.1
1,778,636 - +0.4
1,778,641 - -0.1
1,778,681 + +0.1
1,778,682 - -0.1
1,778,868 - CA265_RS07120 0.42 +0.1
1,778,911 - CA265_RS07120 0.51 -0.1
1,778,950 - CA265_RS07120 0.58 -0.1
1,778,997 + CA265_RS07120 0.68 -0.8
1,779,008 + CA265_RS07120 0.70 -0.2
1,779,008 + CA265_RS07120 0.70 -1.2

Or see this region's nucleotide sequence