Experiment: R2A with sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00660 and CA265_RS00665 are separated by 8 nucleotides CA265_RS00665 and CA265_RS00670 are separated by 494 nucleotides
CA265_RS00660: CA265_RS00660 - uvrA paralog in Bacteroidetes <small>(from data)</small>, at 148,916 to 151,729
_RS00660
CA265_RS00665: CA265_RS00665 - lysine transporter LysE, at 151,738 to 152,391
_RS00665
CA265_RS00670: CA265_RS00670 - metallophosphoesterase, at 152,886 to 153,728
_RS00670
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.763 kb on + strand, within CA265_RS00660 at 150.801 kb on + strand, within CA265_RS00660 at 150.802 kb on - strand, within CA265_RS00660 at 150.905 kb on + strand, within CA265_RS00660 at 150.906 kb on - strand, within CA265_RS00660 at 150.927 kb on - strand, within CA265_RS00660 at 150.946 kb on - strand, within CA265_RS00660 at 151.001 kb on + strand, within CA265_RS00660 at 151.002 kb on - strand, within CA265_RS00660 at 151.044 kb on + strand, within CA265_RS00660 at 151.095 kb on + strand, within CA265_RS00660 at 151.095 kb on + strand, within CA265_RS00660 at 151.096 kb on - strand, within CA265_RS00660 at 151.229 kb on + strand, within CA265_RS00660 at 151.246 kb on - strand, within CA265_RS00660 at 151.321 kb on - strand, within CA265_RS00660 at 151.338 kb on + strand, within CA265_RS00660 at 151.339 kb on - strand, within CA265_RS00660 at 151.372 kb on + strand, within CA265_RS00660 at 151.376 kb on - strand, within CA265_RS00660 at 151.376 kb on - strand, within CA265_RS00660 at 151.376 kb on - strand, within CA265_RS00660 at 151.435 kb on + strand, within CA265_RS00660 at 151.457 kb on - strand at 151.523 kb on - strand at 151.523 kb on - strand at 151.523 kb on - strand at 151.523 kb on - strand at 151.567 kb on + strand at 151.568 kb on - strand at 151.568 kb on - strand at 151.666 kb on - strand at 151.787 kb on - strand at 151.804 kb on - strand, within CA265_RS00665 at 151.834 kb on - strand, within CA265_RS00665 at 151.859 kb on - strand, within CA265_RS00665 at 151.859 kb on - strand, within CA265_RS00665 at 152.080 kb on - strand, within CA265_RS00665 at 152.164 kb on + strand, within CA265_RS00665 at 152.279 kb on - strand, within CA265_RS00665 at 152.388 kb on - strand at 152.390 kb on - strand at 152.390 kb on - strand at 152.394 kb on + strand at 152.460 kb on + strand at 152.460 kb on + strand at 152.522 kb on + strand at 152.578 kb on + strand at 152.578 kb on + strand at 152.690 kb on - strand at 152.744 kb on - strand at 152.788 kb on - strand at 152.788 kb on - strand at 152.791 kb on + strand at 152.813 kb on + strand at 152.813 kb on + strand at 152.814 kb on - strand at 152.831 kb on + strand at 152.852 kb on + strand at 152.865 kb on + strand at 152.875 kb on - strand at 152.885 kb on + strand at 152.885 kb on + strand at 152.932 kb on + strand at 152.932 kb on + strand at 152.933 kb on - strand at 152.942 kb on + strand at 153.008 kb on + strand, within CA265_RS00670 at 153.063 kb on + strand, within CA265_RS00670 at 153.066 kb on - strand, within CA265_RS00670 at 153.084 kb on - strand, within CA265_RS00670 at 153.140 kb on + strand, within CA265_RS00670 at 153.172 kb on + strand, within CA265_RS00670 at 153.173 kb on - strand, within CA265_RS00670 at 153.173 kb on - strand, within CA265_RS00670 at 153.198 kb on + strand, within CA265_RS00670 at 153.209 kb on + strand, within CA265_RS00670 at 153.316 kb on + strand, within CA265_RS00670
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium fluoride 25 mM remove 150,763 + CA265_RS00660 0.66 +0.6 150,801 + CA265_RS00660 0.67 -0.6 150,802 - CA265_RS00660 0.67 -0.6 150,905 + CA265_RS00660 0.71 +0.9 150,906 - CA265_RS00660 0.71 +0.1 150,927 - CA265_RS00660 0.71 +0.4 150,946 - CA265_RS00660 0.72 -0.4 151,001 + CA265_RS00660 0.74 -0.2 151,002 - CA265_RS00660 0.74 -0.9 151,044 + CA265_RS00660 0.76 -0.0 151,095 + CA265_RS00660 0.77 -1.2 151,095 + CA265_RS00660 0.77 +0.3 151,096 - CA265_RS00660 0.77 -0.4 151,229 + CA265_RS00660 0.82 +1.7 151,246 - CA265_RS00660 0.83 -0.1 151,321 - CA265_RS00660 0.85 +0.2 151,338 + CA265_RS00660 0.86 +0.1 151,339 - CA265_RS00660 0.86 -1.0 151,372 + CA265_RS00660 0.87 -0.5 151,376 - CA265_RS00660 0.87 -0.1 151,376 - CA265_RS00660 0.87 +0.2 151,376 - CA265_RS00660 0.87 -0.5 151,435 + CA265_RS00660 0.90 +1.1 151,457 - -0.3 151,523 - +0.3 151,523 - -0.2 151,523 - +0.1 151,523 - +0.2 151,567 + -0.1 151,568 - +0.3 151,568 - -0.3 151,666 - +0.1 151,787 - +1.8 151,804 - CA265_RS00665 0.10 +2.1 151,834 - CA265_RS00665 0.15 +1.3 151,859 - CA265_RS00665 0.19 +1.5 151,859 - CA265_RS00665 0.19 +2.0 152,080 - CA265_RS00665 0.52 +2.7 152,164 + CA265_RS00665 0.65 +0.3 152,279 - CA265_RS00665 0.83 +1.4 152,388 - +1.2 152,390 - +0.1 152,390 - -0.5 152,394 + +1.5 152,460 + +0.2 152,460 + +0.3 152,522 + +0.1 152,578 + -0.6 152,578 + -0.2 152,690 - +0.8 152,744 - +1.5 152,788 - -0.9 152,788 - +0.1 152,791 + -0.5 152,813 + -0.4 152,813 + -0.2 152,814 - +0.2 152,831 + +0.1 152,852 + +0.9 152,865 + -0.9 152,875 - +0.8 152,885 + -1.0 152,885 + -0.1 152,932 + -0.6 152,932 + +0.3 152,933 - -0.4 152,942 + -1.4 153,008 + CA265_RS00670 0.14 -0.7 153,063 + CA265_RS00670 0.21 -0.3 153,066 - CA265_RS00670 0.21 -0.3 153,084 - CA265_RS00670 0.23 +0.2 153,140 + CA265_RS00670 0.30 -0.5 153,172 + CA265_RS00670 0.34 -0.1 153,173 - CA265_RS00670 0.34 +0.1 153,173 - CA265_RS00670 0.34 -0.5 153,198 + CA265_RS00670 0.37 -3.0 153,209 + CA265_RS00670 0.38 +0.4 153,316 + CA265_RS00670 0.51 -0.2
Or see this region's nucleotide sequence