Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30005 and AO356_30010 are separated by 0 nucleotides AO356_30010 and AO356_30015 overlap by 32 nucleotides AO356_30015 and AO356_30020 are separated by 289 nucleotides AO356_30020 and AO356_30025 overlap by 4 nucleotides
AO356_30005: AO356_30005 - diguanylate cyclase, at 7,002,751 to 7,003,509
_30005
AO356_30010: AO356_30010 - transcriptional regulator, at 7,003,510 to 7,004,181
_30010
AO356_30015: AO356_30015 - histidine kinase, at 7,004,150 to 7,005,229
_30015
AO356_30020: AO356_30020 - hypothetical protein, at 7,005,519 to 7,006,031
_30020
AO356_30025: AO356_30025 - ferredoxin, at 7,006,028 to 7,006,957
_30025
Position (kb)
7004
7005
7006 Strain fitness (log2 ratio)
-2
-1
0
1 at 7003.188 kb on - strand, within AO356_30005 at 7003.343 kb on + strand, within AO356_30005 at 7003.343 kb on + strand, within AO356_30005 at 7003.344 kb on - strand, within AO356_30005 at 7003.511 kb on + strand at 7003.511 kb on + strand at 7003.512 kb on - strand at 7003.512 kb on - strand at 7003.659 kb on + strand, within AO356_30010 at 7003.660 kb on - strand, within AO356_30010 at 7003.742 kb on + strand, within AO356_30010 at 7003.875 kb on - strand, within AO356_30010 at 7003.875 kb on - strand, within AO356_30010 at 7004.161 kb on + strand at 7004.162 kb on - strand at 7004.228 kb on + strand at 7004.229 kb on - strand at 7004.678 kb on + strand, within AO356_30015 at 7004.678 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.804 kb on - strand, within AO356_30015 at 7005.332 kb on + strand at 7005.378 kb on + strand at 7005.379 kb on - strand at 7005.379 kb on - strand at 7005.392 kb on + strand at 7005.435 kb on - strand at 7005.751 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7006.191 kb on - strand, within AO356_30025
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 7,003,188 - AO356_30005 0.58 -1.2 7,003,343 + AO356_30005 0.78 -0.7 7,003,343 + AO356_30005 0.78 +0.2 7,003,344 - AO356_30005 0.78 -1.1 7,003,511 + +1.1 7,003,511 + +0.0 7,003,512 - -0.3 7,003,512 - +0.1 7,003,659 + AO356_30010 0.22 +0.8 7,003,660 - AO356_30010 0.22 -0.1 7,003,742 + AO356_30010 0.35 -1.1 7,003,875 - AO356_30010 0.54 -0.5 7,003,875 - AO356_30010 0.54 -0.4 7,004,161 + -1.9 7,004,162 - +0.0 7,004,228 + -0.3 7,004,229 - +1.2 7,004,678 + AO356_30015 0.49 -1.6 7,004,678 + AO356_30015 0.49 +0.4 7,004,738 + AO356_30015 0.54 +0.2 7,004,738 + AO356_30015 0.54 -0.3 7,004,804 - AO356_30015 0.61 -0.9 7,005,332 + +1.4 7,005,378 + -0.9 7,005,379 - -1.2 7,005,379 - -0.7 7,005,392 + +0.5 7,005,435 - +1.1 7,005,751 - AO356_30020 0.45 -1.0 7,005,865 - AO356_30020 0.67 -1.4 7,005,865 - AO356_30020 0.67 -0.4 7,005,865 - AO356_30020 0.67 -0.8 7,005,865 - AO356_30020 0.67 -0.5 7,006,191 - AO356_30025 0.18 +0.2
Or see this region's nucleotide sequence