Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29455 and AO356_29460 are separated by 39 nucleotides AO356_29460 and AO356_29465 are separated by 112 nucleotides AO356_29465 and AO356_29470 are separated by 126 nucleotides
AO356_29455: AO356_29455 - amino acid transporter, at 6,853,692 to 6,855,146
_29455
AO356_29460: AO356_29460 - hypothetical protein, at 6,855,186 to 6,855,722
_29460
AO356_29465: AO356_29465 - thiamine biosynthesis protein ThiJ, at 6,855,835 to 6,856,461
_29465
AO356_29470: AO356_29470 - TetR family transcriptional regulator, at 6,856,588 to 6,857,172
_29470
Position (kb)
6855
6856 Strain fitness (log2 ratio)
-2
-1
0
1 at 6854.455 kb on - strand, within AO356_29455 at 6854.455 kb on - strand, within AO356_29455 at 6854.699 kb on + strand, within AO356_29455 at 6854.700 kb on - strand, within AO356_29455 at 6854.737 kb on + strand, within AO356_29455 at 6854.738 kb on - strand, within AO356_29455 at 6854.804 kb on + strand, within AO356_29455 at 6854.810 kb on - strand, within AO356_29455 at 6854.856 kb on + strand, within AO356_29455 at 6854.856 kb on + strand, within AO356_29455 at 6854.856 kb on + strand, within AO356_29455 at 6854.857 kb on - strand, within AO356_29455 at 6854.857 kb on - strand, within AO356_29455 at 6854.996 kb on + strand, within AO356_29455 at 6854.996 kb on + strand, within AO356_29455 at 6854.997 kb on - strand, within AO356_29455 at 6855.098 kb on + strand at 6855.145 kb on - strand at 6855.286 kb on + strand, within AO356_29460 at 6855.286 kb on + strand, within AO356_29460 at 6855.286 kb on + strand, within AO356_29460 at 6855.442 kb on + strand, within AO356_29460 at 6855.443 kb on - strand, within AO356_29460 at 6855.655 kb on + strand, within AO356_29460 at 6855.655 kb on + strand, within AO356_29460 at 6855.655 kb on + strand, within AO356_29460 at 6855.742 kb on + strand at 6855.797 kb on + strand at 6855.798 kb on - strand at 6855.798 kb on - strand at 6855.905 kb on + strand, within AO356_29465 at 6855.905 kb on + strand, within AO356_29465 at 6855.905 kb on + strand, within AO356_29465 at 6855.906 kb on - strand, within AO356_29465 at 6855.906 kb on - strand, within AO356_29465 at 6856.046 kb on - strand, within AO356_29465 at 6856.111 kb on - strand, within AO356_29465 at 6856.111 kb on - strand, within AO356_29465 at 6856.111 kb on - strand, within AO356_29465 at 6856.165 kb on + strand, within AO356_29465 at 6856.167 kb on + strand, within AO356_29465 at 6856.167 kb on + strand, within AO356_29465 at 6856.167 kb on + strand, within AO356_29465 at 6856.167 kb on + strand, within AO356_29465 at 6856.167 kb on + strand, within AO356_29465 at 6856.168 kb on - strand, within AO356_29465 at 6856.168 kb on - strand, within AO356_29465 at 6856.168 kb on - strand, within AO356_29465 at 6856.168 kb on - strand, within AO356_29465 at 6856.282 kb on - strand, within AO356_29465 at 6856.528 kb on - strand at 6856.547 kb on + strand at 6856.547 kb on + strand at 6856.548 kb on - strand at 6856.548 kb on - strand at 6856.646 kb on + strand at 6856.647 kb on - strand, within AO356_29470 at 6856.711 kb on + strand, within AO356_29470 at 6856.711 kb on + strand, within AO356_29470 at 6856.712 kb on - strand, within AO356_29470 at 6856.712 kb on - strand, within AO356_29470
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 6,854,455 - AO356_29455 0.52 +0.7 6,854,455 - AO356_29455 0.52 -0.4 6,854,699 + AO356_29455 0.69 -0.4 6,854,700 - AO356_29455 0.69 -0.2 6,854,737 + AO356_29455 0.72 -0.2 6,854,738 - AO356_29455 0.72 -0.3 6,854,804 + AO356_29455 0.76 -1.1 6,854,810 - AO356_29455 0.77 +0.6 6,854,856 + AO356_29455 0.80 +0.0 6,854,856 + AO356_29455 0.80 -0.2 6,854,856 + AO356_29455 0.80 -0.1 6,854,857 - AO356_29455 0.80 -0.6 6,854,857 - AO356_29455 0.80 -0.5 6,854,996 + AO356_29455 0.90 -0.2 6,854,996 + AO356_29455 0.90 -0.4 6,854,997 - AO356_29455 0.90 +1.1 6,855,098 + +0.6 6,855,145 - +1.1 6,855,286 + AO356_29460 0.19 +0.3 6,855,286 + AO356_29460 0.19 -0.0 6,855,286 + AO356_29460 0.19 +0.2 6,855,442 + AO356_29460 0.48 +0.7 6,855,443 - AO356_29460 0.48 +0.2 6,855,655 + AO356_29460 0.87 +0.7 6,855,655 + AO356_29460 0.87 +0.4 6,855,655 + AO356_29460 0.87 +0.1 6,855,742 + +1.0 6,855,797 + +0.4 6,855,798 - -0.5 6,855,798 - +0.7 6,855,905 + AO356_29465 0.11 -0.0 6,855,905 + AO356_29465 0.11 -0.0 6,855,905 + AO356_29465 0.11 -0.1 6,855,906 - AO356_29465 0.11 +0.6 6,855,906 - AO356_29465 0.11 -0.9 6,856,046 - AO356_29465 0.34 -0.1 6,856,111 - AO356_29465 0.44 +0.1 6,856,111 - AO356_29465 0.44 -1.7 6,856,111 - AO356_29465 0.44 +0.2 6,856,165 + AO356_29465 0.53 -0.9 6,856,167 + AO356_29465 0.53 +1.4 6,856,167 + AO356_29465 0.53 -0.1 6,856,167 + AO356_29465 0.53 +0.0 6,856,167 + AO356_29465 0.53 +0.2 6,856,167 + AO356_29465 0.53 -2.1 6,856,168 - AO356_29465 0.53 -0.2 6,856,168 - AO356_29465 0.53 -0.3 6,856,168 - AO356_29465 0.53 +0.0 6,856,168 - AO356_29465 0.53 -0.8 6,856,282 - AO356_29465 0.71 +0.4 6,856,528 - +0.4 6,856,547 + +0.5 6,856,547 + -0.7 6,856,548 - +0.4 6,856,548 - +0.5 6,856,646 + -2.6 6,856,647 - AO356_29470 0.10 -0.8 6,856,711 + AO356_29470 0.21 -0.6 6,856,711 + AO356_29470 0.21 -0.2 6,856,712 - AO356_29470 0.21 +0.6 6,856,712 - AO356_29470 0.21 -0.0
Or see this region's nucleotide sequence