Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29435 and AO356_29440 are separated by 478 nucleotides AO356_29440 and AO356_29445 are separated by 119 nucleotides
AO356_29435: AO356_29435 - ABC transporter substrate-binding protein, at 6,849,164 to 6,850,276
_29435
AO356_29440: AO356_29440 - AsnC family transcriptional regulator, at 6,850,755 to 6,851,255
_29440
AO356_29445: AO356_29445 - acetylpolyamine aminohydrolase, at 6,851,375 to 6,852,409
_29445
Position (kb)
6850
6851
6852 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.823 kb on - strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6850.135 kb on + strand, within AO356_29435 at 6850.136 kb on - strand, within AO356_29435 at 6850.551 kb on + strand at 6850.551 kb on + strand at 6850.552 kb on - strand at 6850.565 kb on + strand at 6850.565 kb on + strand at 6850.566 kb on - strand at 6850.566 kb on - strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.579 kb on + strand at 6850.580 kb on - strand at 6850.580 kb on - strand at 6850.618 kb on + strand at 6850.619 kb on - strand at 6850.644 kb on + strand at 6850.644 kb on + strand at 6850.854 kb on + strand, within AO356_29440 at 6850.854 kb on + strand, within AO356_29440 at 6850.855 kb on - strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.879 kb on + strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.880 kb on - strand, within AO356_29440 at 6850.883 kb on + strand, within AO356_29440 at 6850.884 kb on - strand, within AO356_29440 at 6850.915 kb on + strand, within AO356_29440 at 6851.077 kb on + strand, within AO356_29440 at 6851.499 kb on + strand, within AO356_29445 at 6851.500 kb on - strand, within AO356_29445 at 6851.500 kb on - strand, within AO356_29445 at 6851.500 kb on - strand, within AO356_29445 at 6851.864 kb on + strand, within AO356_29445 at 6851.864 kb on + strand, within AO356_29445 at 6851.865 kb on - strand, within AO356_29445 at 6851.876 kb on + strand, within AO356_29445 at 6851.882 kb on + strand, within AO356_29445 at 6851.993 kb on + strand, within AO356_29445 at 6852.047 kb on + strand, within AO356_29445 at 6852.053 kb on + strand, within AO356_29445 at 6852.056 kb on + strand, within AO356_29445 at 6852.057 kb on - strand, within AO356_29445 at 6852.057 kb on - strand, within AO356_29445 at 6852.101 kb on + strand, within AO356_29445 at 6852.102 kb on - strand, within AO356_29445 at 6852.102 kb on - strand, within AO356_29445 at 6852.114 kb on - strand, within AO356_29445 at 6852.114 kb on - strand, within AO356_29445 at 6852.114 kb on - strand, within AO356_29445
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 6,849,786 + AO356_29435 0.56 +0.7 6,849,786 + AO356_29435 0.56 +0.0 6,849,786 + AO356_29435 0.56 +0.1 6,849,823 - AO356_29435 0.59 -0.7 6,849,834 + AO356_29435 0.60 -0.1 6,849,834 + AO356_29435 0.60 +0.1 6,849,835 - AO356_29435 0.60 -0.3 6,849,835 - AO356_29435 0.60 -1.3 6,850,135 + AO356_29435 0.87 -0.9 6,850,136 - AO356_29435 0.87 +0.4 6,850,551 + +0.4 6,850,551 + -0.1 6,850,552 - -0.3 6,850,565 + +0.4 6,850,565 + +0.6 6,850,566 - +0.5 6,850,566 - +0.2 6,850,579 + -0.1 6,850,579 + -0.6 6,850,579 + +0.5 6,850,579 + -0.7 6,850,579 + -0.7 6,850,579 + +0.3 6,850,580 - +1.0 6,850,580 - +0.5 6,850,618 + -2.1 6,850,619 - +1.8 6,850,644 + +0.2 6,850,644 + -0.4 6,850,854 + AO356_29440 0.20 +0.9 6,850,854 + AO356_29440 0.20 +0.7 6,850,855 - AO356_29440 0.20 -0.2 6,850,879 + AO356_29440 0.25 -0.5 6,850,879 + AO356_29440 0.25 -0.3 6,850,879 + AO356_29440 0.25 +0.8 6,850,879 + AO356_29440 0.25 -0.9 6,850,880 - AO356_29440 0.25 -0.3 6,850,880 - AO356_29440 0.25 -0.3 6,850,880 - AO356_29440 0.25 +0.9 6,850,880 - AO356_29440 0.25 +0.2 6,850,883 + AO356_29440 0.26 +0.5 6,850,884 - AO356_29440 0.26 -0.4 6,850,915 + AO356_29440 0.32 +0.3 6,851,077 + AO356_29440 0.64 -0.5 6,851,499 + AO356_29445 0.12 -0.1 6,851,500 - AO356_29445 0.12 -1.3 6,851,500 - AO356_29445 0.12 -0.2 6,851,500 - AO356_29445 0.12 +0.1 6,851,864 + AO356_29445 0.47 -0.6 6,851,864 + AO356_29445 0.47 -0.3 6,851,865 - AO356_29445 0.47 -0.9 6,851,876 + AO356_29445 0.48 -0.8 6,851,882 + AO356_29445 0.49 -0.0 6,851,993 + AO356_29445 0.60 -1.6 6,852,047 + AO356_29445 0.65 -0.4 6,852,053 + AO356_29445 0.66 +0.9 6,852,056 + AO356_29445 0.66 -0.4 6,852,057 - AO356_29445 0.66 -1.0 6,852,057 - AO356_29445 0.66 -0.3 6,852,101 + AO356_29445 0.70 -0.9 6,852,102 - AO356_29445 0.70 -0.9 6,852,102 - AO356_29445 0.70 +0.5 6,852,114 - AO356_29445 0.71 -0.0 6,852,114 - AO356_29445 0.71 -1.1 6,852,114 - AO356_29445 0.71 +0.4
Or see this region's nucleotide sequence