Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29425

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29420 and AO356_29425 are separated by 198 nucleotidesAO356_29425 and AO356_29430 are separated by 35 nucleotides AO356_29420: AO356_29420 - 1-aminocyclopropane-1-carboxylate deaminase, at 6,843,658 to 6,844,674 _29420 AO356_29425: AO356_29425 - AsnC family transcriptional regulator, at 6,844,873 to 6,845,382 _29425 AO356_29430: AO356_29430 - histidine kinase, at 6,845,418 to 6,849,140 _29430 Position (kb) 6844 6845 6846Strain fitness (log2 ratio) -2 -1 0 1at 6844.176 kb on - strand, within AO356_29420at 6844.297 kb on + strand, within AO356_29420at 6844.297 kb on + strand, within AO356_29420at 6844.297 kb on + strand, within AO356_29420at 6844.297 kb on + strand, within AO356_29420at 6844.506 kb on - strand, within AO356_29420at 6844.656 kb on + strandat 6844.656 kb on + strandat 6844.771 kb on + strandat 6845.415 kb on + strandat 6845.427 kb on - strandat 6845.450 kb on + strandat 6845.450 kb on + strandat 6845.451 kb on - strandat 6845.459 kb on + strandat 6845.591 kb on + strandat 6845.754 kb on + strandat 6845.754 kb on + strandat 6845.895 kb on - strand, within AO356_29430at 6845.911 kb on + strand, within AO356_29430at 6845.911 kb on + strand, within AO356_29430at 6845.912 kb on - strand, within AO356_29430at 6846.337 kb on + strand, within AO356_29430at 6846.338 kb on - strand, within AO356_29430

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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6,844,176 - AO356_29420 0.51 -0.9
6,844,297 + AO356_29420 0.63 +0.7
6,844,297 + AO356_29420 0.63 -0.4
6,844,297 + AO356_29420 0.63 +0.2
6,844,297 + AO356_29420 0.63 -0.1
6,844,506 - AO356_29420 0.83 -0.4
6,844,656 + -0.3
6,844,656 + -0.0
6,844,771 + +0.5
6,845,415 + -1.2
6,845,427 - -0.4
6,845,450 + -0.2
6,845,450 + -1.0
6,845,451 - +0.3
6,845,459 + -0.1
6,845,591 + +0.6
6,845,754 + -0.7
6,845,754 + -0.9
6,845,895 - AO356_29430 0.13 +0.3
6,845,911 + AO356_29430 0.13 +0.1
6,845,911 + AO356_29430 0.13 +0.4
6,845,912 - AO356_29430 0.13 -0.5
6,846,337 + AO356_29430 0.25 -1.9
6,846,338 - AO356_29430 0.25 -1.5

Or see this region's nucleotide sequence