Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27570

Experiment: Paraquat dichloride 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27565 and AO356_27570 are separated by 135 nucleotidesAO356_27570 and AO356_27575 are separated by 56 nucleotides AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378 _27565 AO356_27570: AO356_27570 - short-chain dehydrogenase, at 6,290,514 to 6,291,299 _27570 AO356_27575: AO356_27575 - Long-chain fatty acid transport protein, at 6,291,356 to 6,292,627 _27575 Position (kb) 6290 6291 6292Strain fitness (log2 ratio) -2 -1 0 1at 6289.566 kb on + strand, within AO356_27565at 6289.872 kb on + strand, within AO356_27565at 6289.873 kb on - strand, within AO356_27565at 6289.873 kb on - strand, within AO356_27565at 6290.514 kb on - strandat 6290.589 kb on + strandat 6290.590 kb on - strandat 6290.760 kb on - strand, within AO356_27570at 6290.760 kb on - strand, within AO356_27570at 6290.859 kb on - strand, within AO356_27570at 6290.952 kb on + strand, within AO356_27570at 6290.997 kb on + strand, within AO356_27570at 6290.997 kb on + strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6291.358 kb on - strandat 6291.379 kb on + strandat 6291.417 kb on + strandat 6291.418 kb on - strandat 6291.471 kb on + strandat 6291.471 kb on + strandat 6291.472 kb on - strandat 6291.472 kb on - strandat 6291.472 kb on - strandat 6291.638 kb on - strand, within AO356_27575at 6291.639 kb on + strand, within AO356_27575at 6291.640 kb on - strand, within AO356_27575at 6291.789 kb on + strand, within AO356_27575at 6291.790 kb on - strand, within AO356_27575at 6291.848 kb on - strand, within AO356_27575at 6291.870 kb on + strand, within AO356_27575at 6291.940 kb on - strand, within AO356_27575at 6291.957 kb on + strand, within AO356_27575at 6291.957 kb on + strand, within AO356_27575at 6291.958 kb on - strand, within AO356_27575at 6292.057 kb on + strand, within AO356_27575at 6292.108 kb on + strand, within AO356_27575at 6292.109 kb on - strand, within AO356_27575at 6292.109 kb on - strand, within AO356_27575at 6292.158 kb on + strand, within AO356_27575at 6292.213 kb on - strand, within AO356_27575at 6292.263 kb on + strand, within AO356_27575at 6292.264 kb on - strand, within AO356_27575

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml
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6,289,566 + AO356_27565 0.44 +0.2
6,289,872 + AO356_27565 0.65 -0.1
6,289,873 - AO356_27565 0.65 +0.6
6,289,873 - AO356_27565 0.65 -0.8
6,290,514 - -0.2
6,290,589 + +0.1
6,290,590 - -1.5
6,290,760 - AO356_27570 0.31 -0.2
6,290,760 - AO356_27570 0.31 -1.0
6,290,859 - AO356_27570 0.44 -0.2
6,290,952 + AO356_27570 0.56 +0.2
6,290,997 + AO356_27570 0.61 -0.6
6,290,997 + AO356_27570 0.61 -0.9
6,290,998 - AO356_27570 0.62 +1.0
6,290,998 - AO356_27570 0.62 -0.5
6,290,998 - AO356_27570 0.62 -0.3
6,290,998 - AO356_27570 0.62 +0.1
6,290,998 - AO356_27570 0.62 -0.2
6,291,358 - -0.6
6,291,379 + +0.9
6,291,417 + +0.1
6,291,418 - +0.0
6,291,471 + +0.0
6,291,471 + -2.4
6,291,472 - +0.1
6,291,472 - +0.2
6,291,472 - -0.2
6,291,638 - AO356_27575 0.22 -0.7
6,291,639 + AO356_27575 0.22 +0.7
6,291,640 - AO356_27575 0.22 +0.7
6,291,789 + AO356_27575 0.34 -0.1
6,291,790 - AO356_27575 0.34 +0.1
6,291,848 - AO356_27575 0.39 -0.9
6,291,870 + AO356_27575 0.40 -1.1
6,291,940 - AO356_27575 0.46 -0.9
6,291,957 + AO356_27575 0.47 -2.5
6,291,957 + AO356_27575 0.47 +0.3
6,291,958 - AO356_27575 0.47 -1.1
6,292,057 + AO356_27575 0.55 -0.1
6,292,108 + AO356_27575 0.59 -0.2
6,292,109 - AO356_27575 0.59 -0.2
6,292,109 - AO356_27575 0.59 -0.4
6,292,158 + AO356_27575 0.63 -0.3
6,292,213 - AO356_27575 0.67 -1.5
6,292,263 + AO356_27575 0.71 -0.7
6,292,264 - AO356_27575 0.71 +0.3

Or see this region's nucleotide sequence