Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25755 and AO356_25760 are separated by 132 nucleotides AO356_25760 and AO356_25765 are separated by 12 nucleotides AO356_25765 and AO356_25770 overlap by 4 nucleotides AO356_25770 and AO356_25775 are separated by 44 nucleotides
AO356_25755: AO356_25755 - 4-carboxymuconolactone decarboxylase, at 5,823,824 to 5,824,228
_25755
AO356_25760: AO356_25760 - flavin reductase, at 5,824,361 to 5,824,846
_25760
AO356_25765: AO356_25765 - carnitine dehydratase, at 5,824,859 to 5,826,340
_25765
AO356_25770: AO356_25770 - 3-oxoadipate enol-lactonase, at 5,826,337 to 5,827,170
_25770
AO356_25775: AO356_25775 - peptide synthetase, at 5,827,215 to 5,827,805
_25775
Position (kb) 5824
5825
5826
5827 Strain fitness (log2 ratio) -2
-1
0
1 at 5823.921 kb on + strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.922 kb on - strand, within AO356_25755 at 5823.951 kb on - strand, within AO356_25755 at 5824.167 kb on + strand, within AO356_25755 at 5824.167 kb on + strand, within AO356_25755 at 5824.482 kb on + strand, within AO356_25760 at 5824.483 kb on - strand, within AO356_25760 at 5824.483 kb on - strand, within AO356_25760 at 5824.602 kb on + strand, within AO356_25760 at 5824.686 kb on + strand, within AO356_25760 at 5824.687 kb on - strand, within AO356_25760 at 5824.687 kb on - strand, within AO356_25760 at 5824.827 kb on + strand at 5824.828 kb on - strand at 5824.828 kb on - strand at 5824.860 kb on + strand at 5824.928 kb on - strand at 5825.016 kb on + strand, within AO356_25765 at 5825.241 kb on + strand, within AO356_25765 at 5825.241 kb on + strand, within AO356_25765 at 5825.242 kb on - strand, within AO356_25765 at 5825.242 kb on - strand, within AO356_25765 at 5825.445 kb on + strand, within AO356_25765 at 5825.446 kb on - strand, within AO356_25765 at 5825.506 kb on - strand, within AO356_25765 at 5825.560 kb on + strand, within AO356_25765 at 5825.561 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.869 kb on - strand, within AO356_25765 at 5825.926 kb on + strand, within AO356_25765 at 5825.926 kb on + strand, within AO356_25765 at 5826.355 kb on + strand at 5826.428 kb on - strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.438 kb on + strand, within AO356_25770 at 5826.439 kb on - strand, within AO356_25770 at 5826.439 kb on - strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.584 kb on + strand, within AO356_25770 at 5826.611 kb on + strand, within AO356_25770 at 5826.612 kb on - strand, within AO356_25770 at 5826.612 kb on - strand, within AO356_25770 at 5826.692 kb on + strand, within AO356_25770 at 5826.692 kb on + strand, within AO356_25770 at 5827.127 kb on + strand at 5827.128 kb on - strand at 5827.255 kb on + strand at 5827.255 kb on + strand at 5827.255 kb on + strand at 5827.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,823,921 + AO356_25755 0.24 +0.9 5,823,922 - AO356_25755 0.24 -1.0 5,823,922 - AO356_25755 0.24 +0.4 5,823,922 - AO356_25755 0.24 -1.2 5,823,922 - AO356_25755 0.24 -0.9 5,823,951 - AO356_25755 0.31 +0.5 5,824,167 + AO356_25755 0.85 +0.8 5,824,167 + AO356_25755 0.85 -0.7 5,824,482 + AO356_25760 0.25 +0.5 5,824,483 - AO356_25760 0.25 +0.1 5,824,483 - AO356_25760 0.25 +0.5 5,824,602 + AO356_25760 0.50 +0.2 5,824,686 + AO356_25760 0.67 -1.3 5,824,687 - AO356_25760 0.67 -0.1 5,824,687 - AO356_25760 0.67 +0.3 5,824,827 + -1.1 5,824,828 - +0.6 5,824,828 - +0.2 5,824,860 + +0.6 5,824,928 - -0.5 5,825,016 + AO356_25765 0.11 -0.2 5,825,241 + AO356_25765 0.26 +0.8 5,825,241 + AO356_25765 0.26 -0.1 5,825,242 - AO356_25765 0.26 +0.8 5,825,242 - AO356_25765 0.26 -0.3 5,825,445 + AO356_25765 0.40 +0.3 5,825,446 - AO356_25765 0.40 -0.6 5,825,506 - AO356_25765 0.44 +0.2 5,825,560 + AO356_25765 0.47 -0.1 5,825,561 - AO356_25765 0.47 -0.6 5,825,869 - AO356_25765 0.68 -0.2 5,825,869 - AO356_25765 0.68 +0.2 5,825,869 - AO356_25765 0.68 -0.6 5,825,926 + AO356_25765 0.72 -0.5 5,825,926 + AO356_25765 0.72 -2.4 5,826,355 + +0.0 5,826,428 - AO356_25770 0.11 -0.1 5,826,438 + AO356_25770 0.12 +1.4 5,826,438 + AO356_25770 0.12 +0.1 5,826,438 + AO356_25770 0.12 +1.0 5,826,439 - AO356_25770 0.12 -0.4 5,826,439 - AO356_25770 0.12 -1.1 5,826,584 + AO356_25770 0.30 +0.2 5,826,584 + AO356_25770 0.30 +0.6 5,826,584 + AO356_25770 0.30 -0.4 5,826,611 + AO356_25770 0.33 -1.3 5,826,612 - AO356_25770 0.33 +0.1 5,826,612 - AO356_25770 0.33 -0.4 5,826,692 + AO356_25770 0.43 +1.6 5,826,692 + AO356_25770 0.43 -0.2 5,827,127 + -0.6 5,827,128 - +0.7 5,827,255 + -0.2 5,827,255 + +1.0 5,827,255 + -0.4 5,827,256 - +0.2
Or see this region's nucleotide sequence