Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25025 and AO356_25030 overlap by 4 nucleotides AO356_25030 and AO356_25035 are separated by 40 nucleotides AO356_25035 and AO356_25040 are separated by 114 nucleotides AO356_25040 and AO356_25045 overlap by 26 nucleotides
AO356_25025: AO356_25025 - cytochrome C oxidase Cbb3, at 5,670,179 to 5,671,675
_25025
AO356_25030: AO356_25030 - uroporphyrin-III methyltransferase, at 5,671,672 to 5,672,514
_25030
AO356_25035: AO356_25035 - heme d1 biosynthesis radical SAM protein NirJ, at 5,672,555 to 5,673,733
_25035
AO356_25040: AO356_25040 - nitrite reductase, at 5,673,848 to 5,674,417
_25040
AO356_25045: AO356_25045 - protein nirG, at 5,674,392 to 5,674,835
_25045
Position (kb) 5672
5673
5674 Strain fitness (log2 ratio) -1
0
1
2 at 5671.581 kb on + strand at 5671.581 kb on + strand at 5671.581 kb on + strand at 5671.581 kb on + strand at 5671.582 kb on - strand at 5671.961 kb on + strand, within AO356_25030 at 5671.962 kb on - strand, within AO356_25030 at 5671.962 kb on - strand, within AO356_25030 at 5671.962 kb on - strand, within AO356_25030 at 5671.962 kb on - strand, within AO356_25030 at 5672.093 kb on + strand, within AO356_25030 at 5672.162 kb on + strand, within AO356_25030 at 5672.162 kb on + strand, within AO356_25030 at 5672.163 kb on - strand, within AO356_25030 at 5672.309 kb on + strand, within AO356_25030 at 5672.829 kb on + strand, within AO356_25035 at 5672.829 kb on + strand, within AO356_25035 at 5672.829 kb on + strand, within AO356_25035 at 5672.830 kb on - strand, within AO356_25035 at 5672.830 kb on - strand, within AO356_25035 at 5672.928 kb on + strand, within AO356_25035 at 5672.928 kb on + strand, within AO356_25035 at 5673.120 kb on + strand, within AO356_25035 at 5673.120 kb on + strand, within AO356_25035 at 5673.121 kb on - strand, within AO356_25035 at 5673.121 kb on - strand, within AO356_25035 at 5673.138 kb on + strand, within AO356_25035 at 5673.138 kb on + strand, within AO356_25035 at 5673.139 kb on - strand, within AO356_25035 at 5673.150 kb on - strand, within AO356_25035 at 5673.156 kb on + strand, within AO356_25035 at 5673.156 kb on + strand, within AO356_25035 at 5673.156 kb on + strand, within AO356_25035 at 5673.442 kb on - strand, within AO356_25035 at 5673.442 kb on - strand, within AO356_25035 at 5673.442 kb on - strand, within AO356_25035 at 5673.442 kb on - strand, within AO356_25035 at 5673.594 kb on + strand, within AO356_25035 at 5673.594 kb on + strand, within AO356_25035 at 5673.595 kb on - strand, within AO356_25035 at 5673.595 kb on - strand, within AO356_25035 at 5673.734 kb on - strand at 5673.734 kb on - strand at 5673.851 kb on + strand at 5673.975 kb on + strand, within AO356_25040 at 5674.044 kb on + strand, within AO356_25040 at 5674.405 kb on + strand at 5674.406 kb on - strand at 5674.406 kb on - strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.420 kb on + strand at 5674.421 kb on - strand at 5674.421 kb on - strand at 5674.552 kb on + strand, within AO356_25045 at 5674.553 kb on - strand, within AO356_25045 at 5674.689 kb on + strand, within AO356_25045 at 5674.689 kb on + strand, within AO356_25045
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,671,581 + -0.0 5,671,581 + -0.3 5,671,581 + +0.1 5,671,581 + -0.2 5,671,582 - +0.4 5,671,961 + AO356_25030 0.34 +1.2 5,671,962 - AO356_25030 0.34 -1.0 5,671,962 - AO356_25030 0.34 +0.6 5,671,962 - AO356_25030 0.34 -0.1 5,671,962 - AO356_25030 0.34 +1.8 5,672,093 + AO356_25030 0.50 +1.1 5,672,162 + AO356_25030 0.58 +0.3 5,672,162 + AO356_25030 0.58 -1.1 5,672,163 - AO356_25030 0.58 -0.8 5,672,309 + AO356_25030 0.76 +1.1 5,672,829 + AO356_25035 0.23 -0.2 5,672,829 + AO356_25035 0.23 +0.6 5,672,829 + AO356_25035 0.23 -0.8 5,672,830 - AO356_25035 0.23 +0.7 5,672,830 - AO356_25035 0.23 -0.1 5,672,928 + AO356_25035 0.32 -0.0 5,672,928 + AO356_25035 0.32 +0.1 5,673,120 + AO356_25035 0.48 +0.5 5,673,120 + AO356_25035 0.48 -0.5 5,673,121 - AO356_25035 0.48 +0.1 5,673,121 - AO356_25035 0.48 +0.0 5,673,138 + AO356_25035 0.49 -0.5 5,673,138 + AO356_25035 0.49 -1.3 5,673,139 - AO356_25035 0.50 +1.1 5,673,150 - AO356_25035 0.50 -0.2 5,673,156 + AO356_25035 0.51 +1.4 5,673,156 + AO356_25035 0.51 -1.1 5,673,156 + AO356_25035 0.51 +0.4 5,673,442 - AO356_25035 0.75 +0.8 5,673,442 - AO356_25035 0.75 +0.7 5,673,442 - AO356_25035 0.75 +0.4 5,673,442 - AO356_25035 0.75 +0.4 5,673,594 + AO356_25035 0.88 +0.3 5,673,594 + AO356_25035 0.88 +0.2 5,673,595 - AO356_25035 0.88 -0.3 5,673,595 - AO356_25035 0.88 +1.1 5,673,734 - -0.2 5,673,734 - +0.2 5,673,851 + +1.0 5,673,975 + AO356_25040 0.22 +0.4 5,674,044 + AO356_25040 0.34 -0.4 5,674,405 + -1.2 5,674,406 - -0.2 5,674,406 - +1.2 5,674,420 + +0.6 5,674,420 + +0.6 5,674,420 + -0.9 5,674,420 + +0.3 5,674,420 + -0.6 5,674,420 + +0.2 5,674,421 - -0.8 5,674,421 - +0.5 5,674,552 + AO356_25045 0.36 +1.2 5,674,553 - AO356_25045 0.36 +0.2 5,674,689 + AO356_25045 0.67 -0.1 5,674,689 + AO356_25045 0.67 -0.8
Or see this region's nucleotide sequence