Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25015 and AO356_25020 are separated by 390 nucleotides AO356_25020 and AO356_25025 are separated by 251 nucleotides
AO356_25015: AO356_25015 - glucarate dehydratase, at 5,667,078 to 5,668,352
_25015
AO356_25020: AO356_25020 - hypothetical protein, at 5,668,743 to 5,669,927
_25020
AO356_25025: AO356_25025 - cytochrome C oxidase Cbb3, at 5,670,179 to 5,671,675
_25025
Position (kb)
5668
5669
5670 Strain fitness (log2 ratio)
-2
-1
0
1 at 5667.807 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.811 kb on - strand, within AO356_25015 at 5667.884 kb on + strand, within AO356_25015 at 5667.885 kb on - strand, within AO356_25015 at 5668.358 kb on + strand at 5668.414 kb on + strand at 5668.415 kb on - strand at 5668.520 kb on + strand at 5668.550 kb on - strand at 5668.575 kb on + strand at 5668.575 kb on + strand at 5668.576 kb on - strand at 5668.576 kb on - strand at 5668.576 kb on - strand at 5668.612 kb on + strand at 5668.613 kb on - strand at 5668.613 kb on - strand at 5668.677 kb on + strand at 5668.678 kb on - strand at 5668.754 kb on + strand at 5668.754 kb on + strand at 5668.845 kb on + strand at 5668.882 kb on - strand, within AO356_25020 at 5668.897 kb on - strand, within AO356_25020 at 5668.933 kb on - strand, within AO356_25020 at 5668.977 kb on + strand, within AO356_25020 at 5668.977 kb on + strand, within AO356_25020 at 5669.103 kb on + strand, within AO356_25020 at 5669.104 kb on - strand, within AO356_25020 at 5669.400 kb on + strand, within AO356_25020 at 5669.436 kb on + strand, within AO356_25020 at 5669.466 kb on + strand, within AO356_25020 at 5669.467 kb on - strand, within AO356_25020 at 5669.467 kb on - strand, within AO356_25020 at 5669.467 kb on - strand, within AO356_25020 at 5669.467 kb on - strand, within AO356_25020 at 5669.487 kb on + strand, within AO356_25020 at 5669.487 kb on + strand, within AO356_25020 at 5669.488 kb on - strand, within AO356_25020 at 5669.691 kb on + strand, within AO356_25020 at 5669.691 kb on + strand, within AO356_25020 at 5669.692 kb on - strand, within AO356_25020 at 5669.692 kb on - strand, within AO356_25020 at 5669.692 kb on - strand, within AO356_25020 at 5669.692 kb on - strand, within AO356_25020 at 5669.724 kb on + strand, within AO356_25020 at 5669.775 kb on + strand, within AO356_25020 at 5669.839 kb on - strand at 5669.906 kb on - strand at 5669.926 kb on - strand at 5669.951 kb on + strand at 5669.966 kb on + strand at 5669.966 kb on + strand at 5669.966 kb on + strand at 5669.967 kb on - strand at 5669.967 kb on - strand at 5669.967 kb on - strand at 5670.063 kb on + strand at 5670.064 kb on - strand at 5670.064 kb on - strand at 5670.064 kb on - strand at 5670.225 kb on + strand at 5670.225 kb on + strand at 5670.226 kb on - strand at 5670.316 kb on + strand at 5670.317 kb on - strand at 5670.331 kb on - strand, within AO356_25025 at 5670.621 kb on + strand, within AO356_25025 at 5670.621 kb on + strand, within AO356_25025 at 5670.622 kb on - strand, within AO356_25025 at 5670.771 kb on + strand, within AO356_25025 at 5670.771 kb on + strand, within AO356_25025 at 5670.772 kb on - strand, within AO356_25025 at 5670.889 kb on - strand, within AO356_25025
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,667,807 + AO356_25015 0.57 -0.8 5,667,810 + AO356_25015 0.57 +0.1 5,667,810 + AO356_25015 0.57 -0.3 5,667,810 + AO356_25015 0.57 -1.2 5,667,810 + AO356_25015 0.57 -0.6 5,667,811 - AO356_25015 0.57 +0.5 5,667,884 + AO356_25015 0.63 -1.2 5,667,885 - AO356_25015 0.63 +1.1 5,668,358 + -0.3 5,668,414 + -0.4 5,668,415 - -1.5 5,668,520 + -0.0 5,668,550 - +0.7 5,668,575 + +0.1 5,668,575 + -0.5 5,668,576 - -0.6 5,668,576 - +0.2 5,668,576 - +0.4 5,668,612 + -0.5 5,668,613 - +0.0 5,668,613 - +0.1 5,668,677 + -0.4 5,668,678 - -0.3 5,668,754 + +0.7 5,668,754 + +0.0 5,668,845 + -0.8 5,668,882 - AO356_25020 0.12 -0.8 5,668,897 - AO356_25020 0.13 -1.0 5,668,933 - AO356_25020 0.16 -2.0 5,668,977 + AO356_25020 0.20 -0.6 5,668,977 + AO356_25020 0.20 +1.3 5,669,103 + AO356_25020 0.30 +0.6 5,669,104 - AO356_25020 0.30 -0.5 5,669,400 + AO356_25020 0.55 -0.6 5,669,436 + AO356_25020 0.58 -1.0 5,669,466 + AO356_25020 0.61 +0.5 5,669,467 - AO356_25020 0.61 +0.2 5,669,467 - AO356_25020 0.61 +0.7 5,669,467 - AO356_25020 0.61 -1.8 5,669,467 - AO356_25020 0.61 +0.1 5,669,487 + AO356_25020 0.63 -0.8 5,669,487 + AO356_25020 0.63 +0.3 5,669,488 - AO356_25020 0.63 +0.1 5,669,691 + AO356_25020 0.80 +0.3 5,669,691 + AO356_25020 0.80 -0.5 5,669,692 - AO356_25020 0.80 -0.3 5,669,692 - AO356_25020 0.80 -0.3 5,669,692 - AO356_25020 0.80 -0.8 5,669,692 - AO356_25020 0.80 +0.0 5,669,724 + AO356_25020 0.83 -1.6 5,669,775 + AO356_25020 0.87 -0.1 5,669,839 - +0.6 5,669,906 - +0.2 5,669,926 - -0.6 5,669,951 + +0.3 5,669,966 + -1.3 5,669,966 + -0.3 5,669,966 + -0.1 5,669,967 - -0.5 5,669,967 - +0.5 5,669,967 - -0.0 5,670,063 + +0.4 5,670,064 - +0.4 5,670,064 - +0.4 5,670,064 - -0.6 5,670,225 + +0.6 5,670,225 + +0.6 5,670,226 - +0.1 5,670,316 + -0.1 5,670,317 - +0.4 5,670,331 - AO356_25025 0.10 -0.8 5,670,621 + AO356_25025 0.30 -0.8 5,670,621 + AO356_25025 0.30 -0.3 5,670,622 - AO356_25025 0.30 -0.0 5,670,771 + AO356_25025 0.40 -0.8 5,670,771 + AO356_25025 0.40 +0.5 5,670,772 - AO356_25025 0.40 +0.9 5,670,889 - AO356_25025 0.47 -0.0
Or see this region's nucleotide sequence