Experiment: Paraquat dichloride 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24970 and AO356_24975 are separated by 137 nucleotides AO356_24975 and AO356_24980 are separated by 257 nucleotides
AO356_24970: AO356_24970 - MFS transporter, at 5,656,352 to 5,657,518
_24970
AO356_24975: AO356_24975 - GntR family transcriptional regulator, at 5,657,656 to 5,659,047
_24975
AO356_24980: AO356_24980 - TonB-dependent receptor, at 5,659,305 to 5,661,446
_24980
Position (kb)
5657
5658
5659
5660 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.692 kb on + strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.693 kb on - strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.847 kb on + strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.848 kb on - strand, within AO356_24970 at 5656.883 kb on + strand, within AO356_24970 at 5656.884 kb on - strand, within AO356_24970 at 5657.165 kb on - strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.166 kb on + strand, within AO356_24970 at 5657.167 kb on - strand, within AO356_24970 at 5657.371 kb on - strand, within AO356_24970 at 5657.425 kb on - strand at 5657.425 kb on - strand at 5657.425 kb on - strand at 5657.433 kb on + strand at 5657.434 kb on - strand at 5657.434 kb on - strand at 5657.621 kb on - strand at 5657.824 kb on + strand, within AO356_24975 at 5657.824 kb on + strand, within AO356_24975 at 5657.825 kb on - strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.073 kb on + strand, within AO356_24975 at 5658.074 kb on - strand, within AO356_24975 at 5658.256 kb on + strand, within AO356_24975 at 5658.373 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.394 kb on + strand, within AO356_24975 at 5658.436 kb on + strand, within AO356_24975 at 5658.493 kb on + strand, within AO356_24975 at 5658.494 kb on - strand, within AO356_24975 at 5658.559 kb on + strand, within AO356_24975 at 5658.560 kb on - strand, within AO356_24975 at 5658.560 kb on - strand, within AO356_24975 at 5658.560 kb on - strand, within AO356_24975 at 5658.607 kb on + strand, within AO356_24975 at 5658.607 kb on + strand, within AO356_24975 at 5658.607 kb on + strand, within AO356_24975 at 5658.608 kb on - strand, within AO356_24975 at 5658.608 kb on - strand, within AO356_24975 at 5658.608 kb on - strand, within AO356_24975 at 5658.725 kb on - strand, within AO356_24975 at 5658.777 kb on + strand, within AO356_24975 at 5658.777 kb on + strand, within AO356_24975 at 5658.778 kb on - strand, within AO356_24975 at 5658.778 kb on - strand, within AO356_24975 at 5658.976 kb on + strand at 5658.976 kb on + strand at 5658.977 kb on - strand at 5658.977 kb on - strand at 5658.977 kb on - strand at 5659.128 kb on + strand at 5659.128 kb on + strand at 5659.290 kb on + strand at 5659.291 kb on - strand at 5659.344 kb on + strand at 5659.435 kb on - strand at 5659.435 kb on - strand at 5659.435 kb on - strand at 5659.464 kb on + strand at 5659.496 kb on + strand at 5659.652 kb on + strand, within AO356_24980 at 5659.653 kb on - strand, within AO356_24980 at 5659.713 kb on + strand, within AO356_24980 at 5659.806 kb on - strand, within AO356_24980 at 5659.970 kb on + strand, within AO356_24980 at 5659.970 kb on + strand, within AO356_24980
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.0625 mg/ml remove 5,656,692 + AO356_24970 0.29 -0.3 5,656,692 + AO356_24970 0.29 -1.4 5,656,692 + AO356_24970 0.29 -1.0 5,656,692 + AO356_24970 0.29 -0.2 5,656,693 - AO356_24970 0.29 +0.2 5,656,693 - AO356_24970 0.29 -0.2 5,656,693 - AO356_24970 0.29 +0.2 5,656,847 + AO356_24970 0.42 -1.7 5,656,847 + AO356_24970 0.42 +0.6 5,656,848 - AO356_24970 0.43 +0.6 5,656,848 - AO356_24970 0.43 -0.4 5,656,883 + AO356_24970 0.46 -0.6 5,656,884 - AO356_24970 0.46 -0.3 5,657,165 - AO356_24970 0.70 -2.6 5,657,166 + AO356_24970 0.70 -0.3 5,657,166 + AO356_24970 0.70 +0.2 5,657,166 + AO356_24970 0.70 -0.4 5,657,167 - AO356_24970 0.70 +0.4 5,657,371 - AO356_24970 0.87 +0.9 5,657,425 - -0.5 5,657,425 - -0.4 5,657,425 - -0.5 5,657,433 + +0.2 5,657,434 - -1.1 5,657,434 - +0.4 5,657,621 - +0.3 5,657,824 + AO356_24975 0.12 -0.5 5,657,824 + AO356_24975 0.12 -0.8 5,657,825 - AO356_24975 0.12 +0.6 5,658,073 + AO356_24975 0.30 -1.0 5,658,073 + AO356_24975 0.30 -0.5 5,658,073 + AO356_24975 0.30 +0.3 5,658,074 - AO356_24975 0.30 +0.4 5,658,256 + AO356_24975 0.43 +0.4 5,658,373 + AO356_24975 0.52 +0.6 5,658,394 + AO356_24975 0.53 -0.3 5,658,394 + AO356_24975 0.53 -0.2 5,658,394 + AO356_24975 0.53 -0.5 5,658,394 + AO356_24975 0.53 -0.4 5,658,436 + AO356_24975 0.56 +0.4 5,658,493 + AO356_24975 0.60 -0.8 5,658,494 - AO356_24975 0.60 -0.2 5,658,559 + AO356_24975 0.65 -0.2 5,658,560 - AO356_24975 0.65 +0.0 5,658,560 - AO356_24975 0.65 -0.4 5,658,560 - AO356_24975 0.65 -0.9 5,658,607 + AO356_24975 0.68 +0.7 5,658,607 + AO356_24975 0.68 +0.2 5,658,607 + AO356_24975 0.68 -0.4 5,658,608 - AO356_24975 0.68 +0.7 5,658,608 - AO356_24975 0.68 -0.9 5,658,608 - AO356_24975 0.68 +0.4 5,658,725 - AO356_24975 0.77 +0.1 5,658,777 + AO356_24975 0.81 +0.4 5,658,777 + AO356_24975 0.81 -0.7 5,658,778 - AO356_24975 0.81 -0.2 5,658,778 - AO356_24975 0.81 -0.4 5,658,976 + +0.2 5,658,976 + -0.7 5,658,977 - -1.3 5,658,977 - -0.8 5,658,977 - +0.2 5,659,128 + +0.4 5,659,128 + +0.4 5,659,290 + -0.5 5,659,291 - -0.9 5,659,344 + +0.3 5,659,435 - -0.2 5,659,435 - +0.4 5,659,435 - +1.0 5,659,464 + +0.7 5,659,496 + +1.0 5,659,652 + AO356_24980 0.16 +0.6 5,659,653 - AO356_24980 0.16 +2.1 5,659,713 + AO356_24980 0.19 +0.8 5,659,806 - AO356_24980 0.23 -0.5 5,659,970 + AO356_24980 0.31 +1.3 5,659,970 + AO356_24980 0.31 +0.2
Or see this region's nucleotide sequence